PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00261.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 231aa    MW: 26784.7 Da    PI: 4.9525
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00261.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85e-2068121457
                              -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                 Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                              ++++t+eq++ Le  Fe+++++   ++e++A +lgL+ rqV vWFqNrRa++k+
  Rsa1.0_00261.1_g00004.1  68 KRKLTDEQVTMLEYSFENEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKN 121
                              4589************************************************95 PP
2HD-ZIP_I/II121.54.2e-3967158293
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              +kr+l++eqv++LE sFe+e+kLe+ rK+++a eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+++  +++Le++v +L
  Rsa1.0_00261.1_g00004.1  67 RKRKLTDEQVTMLEYSFENEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKSQHDSVVLGQCQLESQVLKL 152
                              8************************************************************************************* PP

              HD-ZIP_I/II  88 reelke 93 
                              +e+l+e
  Rsa1.0_00261.1_g00004.1 153 TEQLSE 158
                              **9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.50362122IPR001356Homeobox domain
SuperFamilySSF466895.43E-1865124IPR009057Homeodomain-like
SMARTSM003893.9E-1865126IPR001356Homeobox domain
CDDcd000862.46E-1567123No hitNo description
PfamPF000462.6E-1768121IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-2069129IPR009057Homeodomain-like
PRINTSPR000312.4E-593102IPR000047Helix-turn-helix motif
PROSITE patternPS00027097120IPR017970Homeobox, conserved site
PRINTSPR000312.4E-5102118IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDQTSVLSSQ EYPYTIPTQS ECIIIYQIDG SSSGDGSKQV KRRRKRRSKG SSATNEDDVR  60
AMEGMFRKRK LTDEQVTMLE YSFENEHKLE SGRKEKIAGE LGLDPRQVAV WFQNRRARWK  120
NKKLEEEYAK LKSQHDSVVL GQCQLESQVL KLTEQLSEAQ NEIRKLSERL VVQETSTNSS  180
SSSLSVEAND APNDFEFAPT DTTNYNIPLY MLDNNYYLQN MEYWDGLYEQ F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14046KRRRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a regulatory role in auxin/cytokinin signaling during root development. {ECO:0000269|PubMed:15567172}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00261.1_g00004.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), by salt stress, by indole-3-acetic acid (IAA) and during darkness conditions. Down-regulated by cytokinin. {ECO:0000269|PubMed:15567172, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892580.0AC189258.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021J09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018459867.11e-172PREDICTED: homeobox-leucine zipper protein ATHB-53-like
SwissprotQ9LVR01e-107ATB53_ARATH; Homeobox-leucine zipper protein ATHB-53
TrEMBLA0A3P6DWW01e-134A0A3P6DWW0_BRAOL; Uncharacterized protein
STRINGBra031819.1-P1e-129(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126021731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66700.11e-105homeobox 53
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]