PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00253.1_g00028.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SBP
Protein Properties Length: 1022aa    MW: 112113 Da    PI: 8.6576
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00253.1_g00028.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1283.6e-40139215278
                              -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                      SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                              Cqv++C++dls ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+++
  Rsa1.0_00253.1_g00028.1 139 CQVDSCKEDLSVAKDYHRRHKVCEVHSKATKALVGNQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTTQ 215
                              **************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.8E-33131200IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.086136213IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.23E-36137215IPR004333Transcription factor, SBP-box
PfamPF031105.9E-29139212IPR004333Transcription factor, SBP-box
CDDcd002046.65E-9781912No hitNo description
Gene3DG3DSA:1.25.40.201.2E-7825925IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.11E-9825915IPR020683Ankyrin repeat-containing domain
PROSITE profilePS502979.569826926IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1022 aa     Download sequence    Send to blast
MDEVGPQVAG PVSIHHPIGG RKRDLYYQMS NRQPYWLVPS SQQQRNDWNP KMWEWDSQRF  60
EAKPVEAAQD SLQVANNGTQ FDLNARSDDD NNNNGGLSYE GEERRGLDLN LSSGFNAVEE  120
TRPNKKVKSG SPGRNYPKCQ VDSCKEDLSV AKDYHRRHKV CEVHSKATKA LVGNQMQRFC  180
QQCSRFHLLS EFDEGKRSCR RRLAGHNRRR RKTTQPEEVT SGAVAPGSSD KNAANMDVMA  240
LLTALACAQG RNGSQPNGSP AVPQREQLLQ ILNKINALPL PMDLVSKLNS IGVLARKNLD  300
QPSVMNSRND VNGGASSSPS TMDLLAVLST TLGSSAPEAI AFLSQGGFGS SDKTKLTSSD  360
HAPTTTSSEK RTLEFPSFVG GGGERTSSSN PSPSQDTRSS SLSLQLFTSS PEDERRQPTV  420
ASSGKYNSSA SSNPVEDRSP SSSSPVMQEL FPMQTSPETM RSNNCRTSSP SSPRNSCLPL  480
DLFGASNRGA SAAAANLSYA SSGSDYSPPS LNSDAQDRTG KIVFKLLGKD PSQLPGTLRT  540
EISSWLCSIP SEMESYIRPG CVILSVYVAM SASAWEQLEE NLLQRVSSLV HDSEFWSSTR  600
FLVNTGRQLA SYKHGRIRLS KSWRTLSSPE LITVSPVAVV AGEETSLVLR GRSLTNDGIS  660
FRCAHMGNYT SMEVTGTAHR STRFDELNVN RFKVKCPASL GRCFLEVENG FRSDSFPLII  720
ASAKICKELN RLEDETEEQT YNSGRPSSRE EVVCFLNELG WLFQKKSASG GFSLPRFKFL  780
LVCSVERDYC SLVRTLLDMM VERNLGNDGL MMSRESLDML AEIQLLSRAV KRKNTEMVET  840
LIHYSAKTFI FLPSIKGPGG ITPLHLAASS SGSDDMVDVL TNDPQGIGLS SWNTLIDASG  900
QTPFSYAAMR NNHSYNTLVA RKLADKRNGQ ISLNIENGID QIGVVSKRLN SEMKRSCNTC  960
ASMALKYQKK VSGTRRLFPT RIIHSMVAVA TVCVCVCVFM HAFPIVRQGS HFSWGGLDYG  1020
SV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-29129212384squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00253.1_g00028.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445812.10.0PREDICTED: squamosa promoter-binding-like protein 16
SwissprotQ700C20.0SPL16_ARATH; Squamosa promoter-binding-like protein 16
TrEMBLA0A0D3D1740.0A0A0D3D174_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G1L70.0A0A3P6G1L7_BRAOL; Uncharacterized protein
STRINGBo6g120690.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39992554
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76580.10.0SBP family protein