PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00246.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 420aa    MW: 45886.9 Da    PI: 8.0839
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00246.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix643.3e-2033122186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                              +W ++e+ aL++a+++++ +lrrg+l++++W++v++++      +g  +s++qC++k+e+l+kry+ +k+++ +r  + ss++ +f
  Rsa1.0_00246.1_g00004.1  33 CWNDEETAALVNAYKDKWFALRRGNLRAADWDDVAAAVsslhTLGGPAKSAIQCRHKIEKLRKRYRGEKQRSLNRPGKFSSSWDLF 118
                              7*************************************888777889****************************9999******* PP

                 trihelix  83 dqle 86 
                                l+
  Rsa1.0_00246.1_g00004.1 119 PVLD 122
                              9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.5E-2132124No hitNo description
SMARTSM005950.007141129IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MSTPDGSPVA TAVDPSTAVT VATATTRRVP PPCWNDEETA ALVNAYKDKW FALRRGNLRA  60
ADWDDVAAAV SSLHTLGGPA KSAIQCRHKI EKLRKRYRGE KQRSLNRPGK FSSSWDLFPV  120
LDAMEFAPVT PTAAEPYDPD PDNDEESNGL DGFRVRSKRS GKFDGFGVRS RSKSQMKMYG  180
GGGFDSDHDS GGGGFGLKRR YNGNPKVSSG GGDFDADSDE EIVLVPKSGR LKGSSHGKPS  240
SGEFGGGFPL KSFGDRSFAS HGFNKAKSFG KPEANFSPEM DYDDEFDEGF SPRIQHGRSS  300
SRANGYGRKD GSYPRGNNTG VVSNGYGSSS RFKHEQMNAV ADVESADPID EVVSSVKMLT  360
EMFVRVENSK MEMMREMEKT RMEMELKHCQ MMLESQQQII GAFAEALSEK KSTNARRPGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00246.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325680.0AC232568.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH122A22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472369.10.0PREDICTED: uncharacterized protein LOC108843634
SwissprotO235501e-137FRIP2_ARATH; Protein FIP2
TrEMBLA0A3P5Z9K10.0A0A3P5Z9K1_BRACM; Uncharacterized protein
TrEMBLM4FG830.0M4FG83_BRARP; Uncharacterized protein
STRINGBra040110.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104831828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-21Trihelix family protein
Publications ? help Back to Top
  1. Sakai T, et al.
    The wavy growth 3 E3 ligase family controls the gravitropic response in Arabidopsis roots.
    Plant J., 2012. 70(2): p. 303-14
    [PMID:22122664]