PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00233.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 273aa    MW: 31315.7 Da    PI: 8.241
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00233.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.72.7e-171051243
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                             ri n+  r +t+ kR++ ++KKA+E S+LC+++ ++i+++++
  Rsa1.0_00233.1_g00006.1 10 RITNEKTRITTYRKRKECLFKKASEFSTLCGVNTCLIVYGPS 51
                             89**************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-15160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.993151IPR002100Transcription factor, MADS-box
CDDcd002662.05E-25282No hitNo description
SuperFamilySSF554552.88E-19298IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-7323IPR002100Transcription factor, MADS-box
PfamPF003198.5E-171051IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGRKMVKMAR ITNEKTRITT YRKRKECLFK KASEFSTLCG VNTCLIVYGP SRAGDERIDH  60
PELWPKDERK VREIITKYRD TAPSSCTKTY SVQECLEKSK IKVEKEKYCP WDNKLDKCSL  120
NELYAAFLTV CNKIQEASKR NQKFPDASNW STHDQLGFIG YNQPCLEQHQ LFPMSSVEQN  180
GFSFLPFLNQ MTSNTAEVAT FSNVTEPEMT QAMFYGSCSD GQYVPMVHKT DYMEPVQWGL  240
GNSVFNNVKP FADYPALRFG QVNDLESSGK TPM
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00233.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895420.0AC189542.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004B20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472574.10.0PREDICTED: agamous-like MADS-box protein AGL82
TrEMBLA0A397ZU830.0A0A397ZU83_BRACM; Uncharacterized protein
TrEMBLM4EJJ90.0M4EJJ9_BRARP; Uncharacterized protein
STRINGBra028965.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59481947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-146M-type_MADS family protein