PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00221.1_g00026.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CO-like
Protein Properties Length: 334aa    MW: 37665.7 Da    PI: 6.4471
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00221.1_g00026.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.61.7e-051547234
                 zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeH 34
                             + r+C+ +e+  +  +C+ ++  lC  C  + H
  Rsa1.0_00221.1_g00026.1 15 QHRICDYCESSVALVYCKADSAKLCLACDNKVH 47
                             6789*************************9988 PP
2zf-B_box21.83.8e-0761102542
                 zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42 
                               C+ +++ + + fC + ++ lC++C  ++H +    H+++pl
  Rsa1.0_00221.1_g00026.1  61 LCDSCHDSPSSVFCDTESSVLCQNCDWQHHTSssslHSRRPL 102
                              7***************************88668899988775 PP
3CCT591.6e-20290333144
                      CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                              R+ al+RYk K+k+R++eK+irYesRK++AesR R++GrF+k++
  Rsa1.0_00221.1_g00026.1 290 RNSALSRYKAKKKSRRYEKHIRYESRKVRAESRTRIRGRFAKSD 333
                              899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.0111461IPR000315B-box-type zinc finger
SMARTSM003367.1E-121461IPR000315B-box-type zinc finger
CDDcd000218.22E-61761No hitNo description
PROSITE profilePS5011910.23957102IPR000315B-box-type zinc finger
CDDcd000219.49E-56188No hitNo description
SMARTSM003360.4262102IPR000315B-box-type zinc finger
PfamPF062031.4E-14290332IPR010402CCT domain
PROSITE profilePS5101714.406290332IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MERGGEEEEG SHQQQHRICD YCESSVALVY CKADSAKLCL ACDNKVHVTN QLFSKHFRSL  60
LCDSCHDSPS SVFCDTESSV LCQNCDWQHH TSSSSLHSRR PLEGFSGCPS VTELLALVGL  120
DDLTDKALFL PHPGGSSDQT PPQIVSLNDL VASDGSSHNY RAMDVPPLPK NRHATCGRHK  180
DEMIRQLREL SRSEPSCMKY ETLDAELDTS GFLFLEPGND LFSSTFESQV SGLKWLEDQQ  240
ADYYLYSDDN NVNRGGCTQQ QEEQESSPVM VHVSTSTTTR STHEINSLDR NSALSRYKAK  300
KKSRRYEKHI RYESRKVRAE SRTRIRGRFA KSDP
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00221.1_g00026.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896340.0AC189634.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434827.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
RefseqXP_018434836.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
SwissprotO822561e-147COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLM4CJN90.0M4CJN9_BRARP; Uncharacterized protein
STRINGBra004423.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-121B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]