PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00221.1_g00020.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YB
Protein Properties Length: 516aa    MW: 57505.3 Da    PI: 7.1851
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00221.1_g00020.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB151.22.1e-4745128285
                    NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 
                              +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa+a+lGf+dy+e+lk+
  Rsa1.0_00221.1_g00020.1  45 KEQDRLLPIANVGRIMKNILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWAMANLGFDDYAEQLKK 128
                              89*******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.3E-3517122IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.0E-4638129IPR009072Histone-fold
PfamPF008084.7E-2750114IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.4E-137896No hitNo description
PROSITE patternPS0068508197IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.4E-1397115No hitNo description
PRINTSPR006151.4E-13116134No hitNo description
PfamPF139669.2E-12184250IPR026960Reverse transcriptase zinc-binding domain
SuperFamilySSF530981.52E-8360487IPR012337Ribonuclease H-like domain
CDDcd062224.48E-15363483No hitNo description
PfamPF134561.7E-18365485No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MAGNYPYFHN PIPRFQNYNF ASSSSHHHQH HDGLVVEQEE NMVIKEQDRL LPIANVGRIM  60
KNILPPNAKI SKEAKETMQE CVSEFISFVT GEASDKCHKE KRKTVNGDDI CWAMANLGFD  120
DYAEQLKKCQ TTRVWQDSWI SLEENIKPMG PITEAXXXXX XXXXXXXXXX XXXXXXXPQV  180
TEFHWIKDIW AGEFSPKMRA FLWVLIQNAL PLRVNLQIRG NLSATNCARC SIPETALHCF  240
FTCPFAVSVW DLIPLQRAVH LAGSASIQEV IFSLRNTVCL PPTGVAHNIL PWVLWAIWTS  300
CNILIFENRG LTPEETAIKG LRLAQEWSMA QGEPKKNNSV PDGIGGSTAQ ASRSLLSDDA  360
ISCSTDAAWD KTRKKAGLGW IFSGPPLQTP IHGSRSQEFI GSPLIAEAVT MRSALCMASS  420
LGFTNLRVFT DSSTLHGAIS DKLQSKEIIG IVSDILSISS GFASIEFFFH PRSQNKIADS  480
IAKKALSSSL DPGGMWPRTE RSLSFAELGH RVLIER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-3644127184Transcription factor HapC (Eurofung)
4g92_B1e-3644127184Transcription factor HapC (Eurofung)
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00221.1_g00020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7876650.0KC787665.1 Brassica napus transcription factor subunit NF-YB5 (NF-YB5) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129032.10.0PREDICTED: uncharacterized protein LOC103853884
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.11e-73nuclear factor Y, subunit B5