PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00220.1_g00024.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 284aa    MW: 31747.4 Da    PI: 4.8488
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00220.1_g00024.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-20142192255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr ++ +g+++AeIrdp   + + +r++lg+f+ta eAa+a+++a+ kl+g
  Rsa1.0_00220.1_g00024.1 142 HYRGVRMRP-WGKFAAEIRDP---NrRGTRVWLGTFDTAIEAARAYDQAAFKLRG 192
                              7********.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-32141201IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22142201IPR016177DNA-binding domain
PROSITE profilePS5103224.012142200IPR001471AP2/ERF domain
SMARTSM003801.2E-35142206IPR001471AP2/ERF domain
CDDcd000183.03E-29142200No hitNo description
PfamPF008471.4E-14142192IPR001471AP2/ERF domain
PRINTSPR003671.7E-10143154IPR001471AP2/ERF domain
PRINTSPR003671.7E-10166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MATPSEASAL SFIKKHLLDE SSPLPNVTTT NPWIASETSS DFSIFGSFDQ TGFDFTEFEI  60
KPEITDSLEF EPEAKAEISL ASNQSFTFQS NPRVVTGSAS RSNRKPALKI EPPNRTEWIQ  120
FATGNPEPEQ LPVHVAEEEK RHYRGVRMRP WGKFAAEIRD PNRRGTRVWL GTFDTAIEAA  180
RAYDQAAFKL RGSKAIVNFP LEAGTWSARA EVGQNKRKRD GEEEEEEVKV AAKVVKTEES  240
HAVETETSSL TAVDDWDLTE FMSMPLLSPL SPHPPFGYPR LSVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-27141202465ATERF1
3gcc_A3e-27141202465ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00437DAPTransfer from AT4G17490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00220.1_g00024.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2367910.0AC236791.1 Brassica napus clone JBr38I20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448538.10.0PREDICTED: ethylene-responsive transcription factor 6-like
SwissprotQ8VZ911e-123EF103_ARATH; Ethylene-responsive transcription factor 6
TrEMBLQ2A9I51e-167Q2A9I5_BRAOL; Ethylene responsive element binding factor, putative
STRINGBo8g049450.11e-167(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.11e-108ethylene responsive element binding factor 6