PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00220.1_g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | G2-like | ||||||||
Protein Properties | Length: 296aa MW: 34130 Da PI: 8.4583 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.4 | 2.5e-31 | 141 | 194 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt +LH++Fv+av+ LGG+e+AtPk++lelm+v++Ltl+hvkSHLQ+YR+ Rsa1.0_00220.1_g00013.1 141 PRMRWTATLHAHFVRAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRT 194 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.48E-15 | 138 | 195 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-27 | 139 | 195 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.2E-23 | 141 | 195 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.5E-7 | 142 | 193 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MELFPSQPDL NLNISRRREE QEQEQVERRL VYQSKASDSV RKDSGHLIHT IKFISNYEPT 60 KIYHNQEHNE CQDQDSRSIL MVSQNQTLDH YYYSPTPPFL FSEVNGQHSN PNYSHKFYLR 120 HRRQAQPQPQ RFTAKRGVRA PRMRWTATLH AHFVRAVQLL GGHERATPKS VLELMDVQDL 180 TLAHVKSHLQ MYRTIKSTEK PTSPGQSDTC DDGAQVKSER QARDLQGLWN NSSSEARFHL 240 KANASGLDIS YNKNVDQRCA SYELLSSDSS SLAWTRPETE TPNLDFTLAT PNLLPP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-16 | 142 | 196 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-16 | 142 | 196 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-16 | 142 | 196 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-16 | 142 | 196 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-16 | 142 | 196 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-16 | 142 | 196 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-16 | 142 | 196 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-16 | 142 | 196 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:17307928}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00220.1_g00013.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353455 | 0.0 | AK353455.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-31-C13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018448085.1 | 0.0 | PREDICTED: probable transcription factor KAN3 isoform X1 | ||||
Refseq | XP_018448088.1 | 0.0 | PREDICTED: probable transcription factor KAN3 isoform X1 | ||||
Swissprot | Q941I2 | 1e-139 | KAN3_ARATH; Probable transcription factor KAN3 | ||||
TrEMBL | A0A3N6PWS0 | 0.0 | A0A3N6PWS0_BRACR; Uncharacterized protein | ||||
STRING | Bo8g049650.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13984 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17695.1 | 1e-123 | G2-like family protein |