PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00198.1_g00037.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 273aa    MW: 31503 Da    PI: 7.8976
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00198.1_g00037.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.4e-141663148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g W++eEde+l + +  +G  +W+t++ + g+ R +k+c++rw +yl
  Rsa1.0_00198.1_g00037.1 16 KGFWSPEEDEKLSRFILSHGHSCWTTVPIKAGLQRNGKSCRLRWINYL 63
                             688*******************************************97 PP

2Myb_DNA-binding48.42.2e-1573114548
                              -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              ++eE+e+++  +  lG++ W++Ia++++ gRt++++k++w+++l
  Rsa1.0_00198.1_g00037.1  73 SAEEEEIILTFHSSLGNK-WSKIAQYLP-GRTDNEIKNYWHSHL 114
                              89****************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.4081163IPR017930Myb domain
SuperFamilySSF466893.19E-2713110IPR009057Homeodomain-like
SMARTSM007171.6E-91565IPR001005SANT/Myb domain
PfamPF002492.4E-111763IPR001005SANT/Myb domain
CDDcd001671.17E-71963No hitNo description
Gene3DG3DSA:1.10.10.602.0E-191970IPR009057Homeodomain-like
PROSITE profilePS5129422.23664118IPR017930Myb domain
SMARTSM007172.7E-1368116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2371117IPR009057Homeodomain-like
CDDcd001672.35E-1073114No hitNo description
PfamPF002491.4E-1373114IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MAKMKSGERL KQRQRKGFWS PEEDEKLSRF ILSHGHSCWT TVPIKAGLQR NGKSCRLRWI  60
NYLRPGLKRD MISAEEEEII LTFHSSLGNK WSKIAQYLPG RTDNEIKNYW HSHLKKRWLT  120
THSSQHAPSI SSSSGSRVSC GERNTQTLVP NHVISFQGLP DKTSSSPSQE SNNNYLCSSG  180
PEEIPRFFFS EWFSSSDVTD SKHNQAPSIE GTISDYQEPG DVDQFHYNEM MMNNSNWTLD  240
DVVFSSKCKK QEQKINKEDS DCNSFGFFFF HQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-23161177107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00198.1_g00037.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196091e-124AY519609.1 Arabidopsis thaliana MYB transcription factor (At4g25560) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018463683.10.0PREDICTED: transcription factor LAF1-like
SwissprotQ9M0K41e-136LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A398AU451e-149A0A398AU45_BRACM; Uncharacterized protein
TrEMBLA0A3P5ZFW61e-149A0A3P5ZFW6_BRACM; Uncharacterized protein
STRINGBo1g040300.11e-143(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.11e-134myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]