PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00191.1_g00026.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 289aa    MW: 33208.2 Da    PI: 8.1019
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00191.1_g00026.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.51.9e-5161351128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                              lppGfrFhPtd+el+ +yL++kveg ++el evi+ +d+yk++Pw+Lp +  + +++ ew+fF+++dkky++g r+nratk+gyWk
  Rsa1.0_00191.1_g00026.1   6 LPPGFRFHPTDQELIGYYLTRKVEGLEIEL-EVIPVIDLYKFDPWELPdQsFLPNRDMEWFFFCPKDKKYPNGLRSNRATKTGYWK 90 
                              79****************************.99**************96335566888**************************** PP

                      NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               tgkd++++++ +g l+g +ktLvfy+grap g +t+W+mheyrl
  Rsa1.0_00191.1_g00026.1  91 PTGKDRKITCRsSGVLTGYRKTLVFYEGRAPLGARTNWFMHEYRL 135
                              *********9967788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-583159IPR003441NAC domain
PROSITE profilePS5100557.4966159IPR003441NAC domain
PfamPF023657.3E-287135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGSSCLPPGF RFHPTDQELI GYYLTRKVEG LEIELEVIPV IDLYKFDPWE LPDQSFLPNR  60
DMEWFFFCPK DKKYPNGLRS NRATKTGYWK PTGKDRKITC RSSGVLTGYR KTLVFYEGRA  120
PLGARTNWFM HEYRLNDDNL SQKSPNFKGA FALCRVVKKS QLKTKTLKNK DEQAISSGCS  180
SLATSPCRDE TTQLQSFKPY STTNKSSTSI WQSTDFILDS SKDYPHTQEG VSEFSNLHFP  240
VNKANHHVGF PESSSYLNVD QDIDQSMPTG YWPNYEYDQT GSFAYSNLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-48615917165NO APICAL MERISTEM PROTEIN
1ut4_B2e-48615917165NO APICAL MERISTEM PROTEIN
1ut7_A2e-48615917165NO APICAL MERISTEM PROTEIN
1ut7_B2e-48615917165NO APICAL MERISTEM PROTEIN
3swm_A2e-48615920168NAC domain-containing protein 19
3swm_B2e-48615920168NAC domain-containing protein 19
3swm_C2e-48615920168NAC domain-containing protein 19
3swm_D2e-48615920168NAC domain-containing protein 19
3swp_A2e-48615920168NAC domain-containing protein 19
3swp_B2e-48615920168NAC domain-containing protein 19
3swp_C2e-48615920168NAC domain-containing protein 19
3swp_D2e-48615920168NAC domain-containing protein 19
4dul_A2e-48615917165NAC domain-containing protein 19
4dul_B2e-48615917165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00191.1_g00026.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470550.10.0PREDICTED: NAC domain-containing protein 86
SwissprotO496971e-139NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A3P6EUP00.0A0A3P6EUP0_BRAOL; Uncharacterized protein
STRINGBo1g019130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21512777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-141NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]