PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00188.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 287aa MW: 32756.4 Da PI: 6.8828 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.4e-19 | 138 | 188 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +g+WvAeIr p++ r r +lg+f+taeeAa a+++ + kl+g+ Rsa1.0_00188.1_g00003.1 138 LYRGVRQRQ-WGKWVAEIRKPKS---RSRLWLGTFDTAEEAAMAYDRQAFKLRGH 188 59****999.**********954...4**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.19E-34 | 137 | 196 | No hit | No description |
SMART | SM00380 | 7.5E-39 | 138 | 201 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-23 | 138 | 196 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-32 | 138 | 196 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.591 | 138 | 195 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.5E-13 | 139 | 188 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-11 | 139 | 150 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-11 | 161 | 177 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MDFDEELNLC TTKGKNIDTS SGEASSTTSP RSMKKMRNID HRPKPYFSFS SSSSSNSLGA 60 FPFSLDPTFH NHQQQQLGYV PVNQQHDQKQ MISFSPQQPQ QQYMFKYWSD TLNLSPRGRR 120 MMMMNQESIV QPYSATKLYR GVRQRQWGKW VAEIRKPKSR SRLWLGTFDT AEEAAMAYDR 180 QAFKLRGHNA TLNFPERFVN KEVELHDSAC ESSSLDQKQT ETQQPNEANL ESKEVSLSSD 240 GGLEGGMAEA WFNAVTSGWG PESPLWDDLD SSQFLHSSSS CPMKPFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-22 | 137 | 197 | 1 | 62 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 33 | 43 | KKMRNIDHRPK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00188.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018447938.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF054-like | ||||
Swissprot | Q9M0J3 | 1e-136 | ERF54_ARATH; Ethylene-responsive transcription factor ERF054 | ||||
TrEMBL | A0A397YIG0 | 1e-175 | A0A397YIG0_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P6BRE5 | 1e-175 | A0A3P6BRE5_BRACM; Uncharacterized protein | ||||
STRING | Bra010383.1-P | 1e-169 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2141 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28140.1 | 1e-123 | ERF family protein |
Publications ? help Back to Top | |||
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