PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00185.1_g00022.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GeBP
Protein Properties Length: 332aa    MW: 37248.4 Da    PI: 6.8182
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00185.1_g00022.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573122.32.4e-38126215297
                   DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 
                              +f+rlw+eeDei++LqG+idfk++tg sp+dd++a y+++kksisf+vsk+q+++K+r+LKkK+ +k k+      +sf+k+h++k
  Rsa1.0_00185.1_g00022.1 126 AFHRLWTEEDEIAVLQGMIDFKKDTGNSPYDDTNAYYDYIKKSISFEVSKNQFMDKLRSLKKKYMGKDKR------TSFTKPHEHK 205
                              699*****************************************************************99......9********* PP

                   DUF573  88 ifelskkiWg 97 
                              ++ l+k iWg
  Rsa1.0_00185.1_g00022.1 206 SYRLCKFIWG 215
                              *********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.4E-30127215IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MTKKHNPLEN PPAASSSDDD EELDSSAGEE EEQEEEVNDS SSSSEEDQPK PPSSSSAVTT  60
AIPAKTSDSH SGSDTETDSE SDIAAKSKNQ KPPPPPTNKS GTKRPSEVTS KETNSKRAKK  120
EKKPAAFHRL WTEEDEIAVL QGMIDFKKDT GNSPYDDTNA YYDYIKKSIS FEVSKNQFMD  180
KLRSLKKKYM GKDKRTSFTK PHEHKSYRLC KFIWGPDGMG LESAVKSNGK TKKKVDDSVK  240
KELSFASSPP NGGDERFDWF EKSFLVRGIA GFGVDESYVK QRWRLVPAET RKKVEEKVKM  300
LQAKEIEFVL EKTEILRDVT SMIAEASKNK SH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279292KQRWRLVPAETRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00185.1_g00022.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434903.10.0PREDICTED: probable transcription factor At1g61730
SwissprotQ9SYA91e-108STKLD_ARATH; Probable transcription factor At1g61730
TrEMBLA0A3P6C3X01e-160A0A3P6C3X0_BRAOL; Uncharacterized protein
STRINGBo4g087160.11e-159(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.13e-89DNA-binding storekeeper protein-related transcriptional regulator