PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_00183.1_g00024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 264aa MW: 29376.3 Da PI: 9.8266 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.8 | 3.2e-30 | 120 | 173 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av +L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Rsa1.0_00183.1_g00024.1 120 RPRLVWTPQLHKRFVDAVGHL-GIKNAVPKTIMQLMSVEGLTRENVASHLQKYRL 173 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.19 | 117 | 176 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.11E-19 | 117 | 177 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-30 | 119 | 178 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.5E-24 | 121 | 173 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.4E-7 | 123 | 172 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 264 aa Download sequence Send to blast |
MREETPNWFV RWEEELPSPE ELIPISQTLI TPHLALAFQI GSHNNHSSPK TTAAMYHQKL 60 QPSHNNHSSP KTTAAMYHQK LQPPATPTMM NSDFGAVDSS TDLGSGGVGG GDEPARTLKR 120 PRLVWTPQLH KRFVDAVGHL GIKNAVPKTI MQLMSVEGLT RENVASHLQK YRLYLRRMQG 180 GNGNGVSGGH VMVSDSATDR LFASSPVPAH FLSPVRMNSE YLMMNPYLGK HVVKQQNQVV 240 RNLRYEEDSE YGNGDGGRKV LKLF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 4e-32 | 120 | 176 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_00183.1_g00024.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018438002.1 | 1e-151 | PREDICTED: transcription factor LUX | ||||
Swissprot | O22210 | 1e-112 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | A0A397Z7S2 | 1e-130 | A0A397Z7S2_BRACM; Uncharacterized protein | ||||
STRING | Bra004593.1-P | 1e-122 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1549 | 27 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40970.1 | 1e-103 | G2-like family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|