PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00181.1_g00021.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 329aa    MW: 37548 Da    PI: 8.7607
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00181.1_g00021.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.12e-121153648
                             HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                   SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                             + ++ + f  R +++lKKA+ELS LC+++ ++i +  +g l +
  Rsa1.0_00181.1_g00021.1 11 SVRKDTFFKARAKTVLKKAYELSELCGVNLCIICYDREGSLVT 53
                             6677788888*****************************9854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.5E-4157IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.236451IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-101164IPR002100Transcription factor, MADS-box
PfamPF003192.2E-91453IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MTRKICRSKL SVRKDTFFKA RAKTVLKKAY ELSELCGVNL CIICYDREGS LVTTWPENDE  60
AQMDKGVCLK MKFSIKVNGK LPYVYWKDLE SKWKTWKASA DVLGEVLPRS GRSKPVAPCS  120
KSMKSGRGPG DVKATAERFS RLSEQERNKK STNLSRFLNK KMMDEKKASL KANDNKFSKE  180
VFVFEDSLET RLGLFQQKIT ELVDDDDHGL VVSTDLPTTS LNQPSNFSIL LFNHDSGTFT  240
QLVNSSTLPP CFEQPVIPCN QDYGTNYLDL LLAEQDMRSC NNFDLPIPPH PMMHTQTSMF  300
RQFDHQFMQT QQGMIPYNQS SGYPTMMFS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00181.1_g00021.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018459667.11e-144PREDICTED: agamous-like MADS-box protein AGL93
TrEMBLA0A078JR447e-50A0A078JR44_BRANA; BnaCnng56720D protein
STRINGBo6g014360.13e-50(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15639717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26950.16e-17AGAMOUS-like 93