PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00176.1_g00008.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 267aa MW: 30901 Da PI: 5.7473

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00176.1_g00008.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	74.4	1.4e-23	144	190	6	52
RWP-RK 6 sledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 s ed++ yF+lpi++AAkeL+v++T+LK++CR++G +RWPhRk++s+ Rsa1.0_00176.1_g00008.1 144 SREDMKPYFKLPITEAAKELDVGVTLLKKRCRELGFSRWPHRKLTSI 190 689*****************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.666	124	210	IPR003035	RWP-RK domain
Pfam	PF02042	5.7E-20	144	190	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MADDKLLWSW SESFDYESFL QEENLSSLLD QSLPFDYNSF INPFEDYQNE AWFALQDSIN 60 LEPISTCFPA GDDHMSMASV DLEAISTLSQ DVFSELLWNG NASNLNNHVE PAIKIILHDG 120 NSTTKETTRQ KRRYKKDRLI QSYSREDMKP YFKLPITEAA KELDVGVTLL KKRCRELGFS 180 RWPHRKLTSI DGIITNLKDH LGKMKGETNK SNLMNALEIL EAEKKMIEEF PDLEFRDTTK 240 RLRQACFKAN YKRRKLLSSM STTSSVS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00176.1_g00008.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018455329.1	0.0	PREDICTED: protein RKD3
Swissprot	Q9FGD1	2e-91	RKD3_ARATH; Protein RKD3
TrEMBL	A0A078G1X7	1e-159	A0A078G1X7_BRANA; BnaA09g07620D protein
STRING	Bra037130.1-P	1e-147	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12180	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	5e-92	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]