PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00176.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 175aa    MW: 19826 Da    PI: 7.6644
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00176.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.9e-182170255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ykG+r +k +g+WvAeIr+p   +kr+r +lg++ t+e Aa+a++ a  +l+g
  Rsa1.0_00176.1_g00001.1 21 PYKGIRMRK-WGKWVAEIREP---NKRTRLWLGSYSTPEAAARAYDTAVFYLRG 70
                             59*****99.**********9...337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.7742178IPR001471AP2/ERF domain
SMARTSM003802.5E-392184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-302179IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-212279IPR016177DNA-binding domain
CDDcd000189.19E-282280No hitNo description
PfamPF008473.3E-122270IPR001471AP2/ERF domain
PRINTSPR003675.9E-92233IPR001471AP2/ERF domain
PRINTSPR003675.9E-94460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MDGGGVADVA VAMTTRKRER PYKGIRMRKW GKWVAEIREP NKRTRLWLGS YSTPEAAARA  60
YDTAVFYLRG PTARLNFPEL LNGEKFSEED MSGDTIRKKA TEVGAQVDAL GTAVLNNRHR  120
VFGQSRESDD DSSKRYHRNY QNGELEEDDK SLKSGGWLLE RVDLNKVPDP ESSDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-152282667ATERF1
3gcc_A3e-152282667ATERF1
5wx9_A5e-1522821576Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00176.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529931e-126AK352993.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-09-J19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018457748.11e-127PREDICTED: ethylene-responsive transcription factor ERF010-like
SwissprotQ9FH946e-97ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLM4F7R31e-115M4F7R3_BRARP; Uncharacterized protein
STRINGBra037124.1-P1e-116(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.13e-99DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]