PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00175.1_g00031.1
Common NameMYB1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 168aa    MW: 18761.3 Da    PI: 7.3065
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00175.1_g00031.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285e-093272348
                             -HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                             +W++Ia +++ gRt++++k++w+++l
  Rsa1.0_00175.1_g00031.1  3 RWSLIAGRLP-GRTANDVKNYWNTHL 27
                             4*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.014131IPR017930Myb domain
SuperFamilySSF466894.13E-7331IPR009057Homeodomain-like
PfamPF002496.4E-7327IPR001005SANT/Myb domain
CDDcd001676.81E-7327No hitNo description
Gene3DG3DSA:1.10.10.602.3E-11327IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MLRWSLIAGR LPGRTANDVK NYWNTHLSKK HEPGCKTQMK KEKRNIPCSP TTLAQKIDVF  60
KPRPRSFTVN NGCSHIIGMP KPDVVPLCLR SNNTKNVCES IATCNKDDDK SELDSNLMDG  120
QNMWWESLLN ENPDPAALFP EATATEKGAT SAFDVEQLWS LLDGETGT
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of phenylpropanoid-derived compounds such as anthocyanins. {ECO:0000269|PubMed:11148285, ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00175.1_g00031.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By sucrose, nitrogen deficiency, ethylene, UV light and drought. {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR7061950.0KR706195.1 Raphanus sativus cultivar Bordeaux anthocyanin regulator (MYB1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444375.11e-121PREDICTED: transcription factor MYB114-like isoform X1
SwissprotQ9ZTC31e-67MYB90_ARATH; Transcription factor MYB90
TrEMBLA0A0H3XWN61e-117A0A0H3XWN6_RAPSA; Anthocyanin regulator
STRINGBo6g100940.19e-98(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66390.15e-70myb domain protein 90
Publications ? help Back to Top
  1. Ilk N,Ding J,Ihnatowicz A,Koornneef M,Reymond M
    Natural variation for anthocyanin accumulation under high-light and low-temperature stress is attributable to the ENHANCER OF AG-4 2 (HUA2) locus in combination with PRODUCTION OF ANTHOCYANIN PIGMENT1 (PAP1) and PAP2.
    New Phytol., 2015. 206(1): p. 422-35
    [PMID:25425527]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Nemie-Feyissa D,Heidari B,Blaise M,Lillo C
    Analysis of interactions between heterologously produced bHLH and MYB proteins that regulate anthocyanin biosynthesis: quantitative interaction kinetics by Microscale Thermophoresis.
    Phytochemistry, 2015. 111: p. 21-6
    [PMID:25659750]
  4. Bac-Molenaar JA,Fradin EF,Rienstra JA,Vreugdenhil D,Keurentjes JJ
    GWA Mapping of Anthocyanin Accumulation Reveals Balancing Selection of MYB90 in Arabidopsis thaliana.
    PLoS ONE, 2015. 10(11): p. e0143212
    [PMID:26588092]
  5. Lim SH, et al.
    Activation of anthocyanin biosynthesis by expression of the radish R2R3-MYB transcription factor gene RsMYB1.
    Plant Cell Rep., 2016. 35(3): p. 641-53
    [PMID:26703384]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Li N, et al.
    The heterologous expression of Arabidopsis PAP2 induces anthocyanin accumulation and inhibits plant growth in tomato.
    Funct. Integr. Genomics, 2018. 18(3): p. 341-353
    [PMID:29372433]