PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00175.1_g00031.1 | ||||||||
Common Name | MYB1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 168aa MW: 18761.3 Da PI: 7.3065 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28 | 5e-09 | 3 | 27 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W++Ia +++ gRt++++k++w+++l Rsa1.0_00175.1_g00031.1 3 RWSLIAGRLP-GRTANDVKNYWNTHL 27 4*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.014 | 1 | 31 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.13E-7 | 3 | 31 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.4E-7 | 3 | 27 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.81E-7 | 3 | 27 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-11 | 3 | 27 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MLRWSLIAGR LPGRTANDVK NYWNTHLSKK HEPGCKTQMK KEKRNIPCSP TTLAQKIDVF 60 KPRPRSFTVN NGCSHIIGMP KPDVVPLCLR SNNTKNVCES IATCNKDDDK SELDSNLMDG 120 QNMWWESLLN ENPDPAALFP EATATEKGAT SAFDVEQLWS LLDGETGT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of phenylpropanoid-derived compounds such as anthocyanins. {ECO:0000269|PubMed:11148285, ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00175.1_g00031.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By sucrose, nitrogen deficiency, ethylene, UV light and drought. {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR706195 | 0.0 | KR706195.1 Raphanus sativus cultivar Bordeaux anthocyanin regulator (MYB1) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018444375.1 | 1e-121 | PREDICTED: transcription factor MYB114-like isoform X1 | ||||
Swissprot | Q9ZTC3 | 1e-67 | MYB90_ARATH; Transcription factor MYB90 | ||||
TrEMBL | A0A0H3XWN6 | 1e-117 | A0A0H3XWN6_RAPSA; Anthocyanin regulator | ||||
STRING | Bo6g100940.1 | 9e-98 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66390.1 | 5e-70 | myb domain protein 90 |