PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00174.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 333aa    MW: 37926.7 Da    PI: 9.4084
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00174.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.28.4e-36351272103
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+y++++d+++++++sw ++ ++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fk
  Rsa1.0_00174.1_g00005.1  35 FLTKTYQLVDDPATDHVVSWGDDDTTFVVWRPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFK 111
                              9*****************************************************************99.........********* PP

                              XXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkkse 103
                              +g+k+ll++i+r+k++
  Rsa1.0_00174.1_g00005.1 112 RGEKHLLCEIHRRKTS 127
                              *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.4E-3827119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.6E-6131124IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.67E-3532124IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.9E-203558IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.2E-3235124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-207385IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407498IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-208698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAMMVENSYG YASGGTAERI QLMMEGQGKA VPAPFLTKTY QLVDDPATDH VVSWGDDDTT  60
FVVWRPPEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KRGEKHLLCE  120
IHRRKTSQVI PNQHSPFITH HPSPQIPFSG GASFFSLPPR IDAAATMDDH YWCESPPPRP  180
RVIPTTVDAQ VTALTEDNER LRRNNTVLMS ELAHMKKLYN DIIYFVQNHV KPVAPSNSNL  240
PSFLQKQQQQ PPPLDYYNNA TVPNHSPPTS QSSISVLEDE TNHESNARKT KLFGVSLPSS  300
KKRSHNFSRQ SSKTRLVLDN SDLGLNLRTA STR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-233112717123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300304KKRSH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00174.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449180.10.0PREDICTED: heat stress transcription factor B-4-like
SwissprotQ9C6350.0HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A078FXM00.0A0A078FXM0_BRANA; BnaC06g00310D protein
TrEMBLA0A3P6H1V60.0A0A3P6H1V6_BRAOL; Uncharacterized protein
STRINGBo6g008100.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-178heat shock transcription factor B4