PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_00173.1_g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 268aa MW: 31301.1 Da PI: 9.5597 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.3 | 6.4e-12 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l+ + G +W+t++ g+ R +k+c++rw +yl Rsa1.0_00173.1_g00014.1 17 KGLWSPEEDQKLKSFILSQGHACWTTVPILAGLQRNGKSCRLRWINYL 64 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.5 | 1.1e-16 | 70 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++++E+e ++ ++ lG++ W++Ia++++ gRt++++k++w++yl Rsa1.0_00173.1_g00014.1 70 RGTFSAQEEETILTLHSSLGNK-WSRIAKYLP-GRTDNEIKNYWHSYL 115 899*******************.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.633 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.76E-26 | 14 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-7 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-10 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-19 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.62E-6 | 20 | 64 | No hit | No description |
PROSITE profile | PS51294 | 24.538 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 9.7E-16 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 70 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-25 | 72 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.05E-10 | 72 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 268 aa Download sequence Send to blast |
MGKMTKSGER PKQRQRKGLW SPEEDQKLKS FILSQGHACW TTVPILAGLQ RNGKSCRLRW 60 INYLRPGLKR GTFSAQEEET ILTLHSSLGN KWSRIAKYLP GRTDNEIKNY WHSYLKKRWL 120 KSQPQFKTER SNVTESSSSP LSCGKRNPET LDNVISFQKL PEKPPSAPSQ GRNKNMMNNN 180 NNMPKLFFSE WITSSDPHIN YSSDFTDSMH INRTQNRSED EELMMINNSY SSLEDDVMFR 240 TDFQQPHNEY ANYYTSEDFF INSDVTYI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-23 | 17 | 118 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_00173.1_g00014.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY519636 | 0.0 | AY519636.1 Arabidopsis thaliana MYB transcription factor (At5g52260) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018475051.1 | 0.0 | PREDICTED: transcription factor LAF1 | ||||
Swissprot | Q9M0K4 | 4e-96 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | A0A3P6A5X1 | 0.0 | A0A3P6A5X1_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EK12 | 0.0 | M4EK12_BRARP; Uncharacterized protein | ||||
STRING | Bra029129.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52260.1 | 1e-146 | myb domain protein 19 |
Publications ? help Back to Top | |||
---|---|---|---|
|