PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00170.1_g00023.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 359aa MW: 39975.6 Da PI: 9.0779

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00170.1_g00023.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123	9.8e-39	118	177	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s+ntkfCyynny++sqPryfC++C+ryWt+GG++rnvPvG+grrknk + Rsa1.0_00170.1_g00023.1 118 PDKILPCPRCESANTKFCYYNNYNVSQPRYFCRNCQRYWTAGGSMRNVPVGSGRRKNKGW 177 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-27	119	175	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.0E-32	120	175	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.546	122	176	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	124	160	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MSMLKSRDRE IKLFGRTITS LSAVNHYDMS KEASPSSSST CSPVAGPNMV IANNHEQDNS 60 RFKGPCILSD LNEPPRAASE ISISSPRSSK TNGDQQSEIT TTTTTSTSEE KPTTLTKPDK 120 ILPCPRCESA NTKFCYYNNY NVSQPRYFCR NCQRYWTAGG SMRNVPVGSG RRKNKGWASS 180 NHYLQVTSSE DYENNNNSGT ILSFGSSESS VTDTGKHQEN KTHQGFLPPQ VMLPNITSPW 240 PYQWSPTGPN TSFYPIPFYW GCTVPIWPTS ETSPCLGKRS RDQTEGDTKD TILRTSEATK 300 NVVWPKLPTK PEKKGLSLFN GFETKGSNRR SLVPEPSINL QANPAAMCRS MNFRESMQQ

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MSMLKSRDRE IKLFGRTITS LSAVNHYDMS KEASPSSSST CSPVAGPNMV IANNHEQDNS  60
RFKGPCILSD LNEPPRAASE ISISSPRSSK TNGDQQSEIT TTTTTSTSEE KPTTLTKPDK  120
ILPCPRCESA NTKFCYYNNY NVSQPRYFCR NCQRYWTAGG SMRNVPVGSG RRKNKGWASS  180
NHYLQVTSSE DYENNNNSGT ILSFGSSESS VTDTGKHQEN KTHQGFLPPQ VMLPNITSPW  240
PYQWSPTGPN TSFYPIPFYW GCTVPIWPTS ETSPCLGKRS RDQTEGDTKD TILRTSEATK  300
NVVWPKLPTK PEKKGLSLFN GFETKGSNRR SLVPEPSINL QANPAAMCRS MNFRESMQQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00170.1_g00023.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189353	0.0	AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018456083.1	0.0	PREDICTED: cyclic dof factor 5-like
Refseq	XP_018456086.1	0.0	PREDICTED: cyclic dof factor 5-like
Swissprot	Q9SEZ3	1e-171	CDF5_ARATH; Cyclic dof factor 5
TrEMBL	A0A3P6H759	0.0	A0A3P6H759_BRAOL; Uncharacterized protein
STRING	Bo6g109100.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13090	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69570.1	1e-156	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689] Martín G, et al. Circadian Waves of Transcriptional Repression Shape PIF-Regulated Photoperiod-Responsive Growth in Arabidopsis. Curr. Biol., 2018. 28(2): p. 311-318.e5 [PMID:29337078]