PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00170.1_g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 388aa MW: 43817.1 Da PI: 7.8856 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.4 | 2.3e-52 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 l pGfrFhPtdeelv++yL++kve+++l++ + i+++diyk++PwdLpk + ++ekewyf+++rd+ky++++r+nr+t++g+Wkat Rsa1.0_00170.1_g00016.1 15 LLPGFRFHPTDEELVSFYLRRKVEHRPLSI-KLITQLDIYKYDPWDLPKFAMTGEKEWYFYCPRDRKYRNSSRPNRVTSAGFWKAT 99 579***************************.89***************7777889******************************* PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+d++++s+ +++ +gl+k+Lvfykgra kg+ktdW+mhe+rl Rsa1.0_00170.1_g00016.1 100 GTDRPIYSSeGSKCIGLRKSLVFYKGRAAKGVKTDWMMHEFRL 142 ********956677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-59 | 11 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.27 | 15 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-25 | 17 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MGENNGEAKK MEDVLLPGFR FHPTDEELVS FYLRRKVEHR PLSIKLITQL DIYKYDPWDL 60 PKFAMTGEKE WYFYCPRDRK YRNSSRPNRV TSAGFWKATG TDRPIYSSEG SKCIGLRKSL 120 VFYKGRAAKG VKTDWMMHEF RLPSSSTHTL SDTPLSPNDS WAICRIFRKA NTTALKATSH 180 SFASSLPTEG STDTEPYEKP SNTAHIYPGN ILENSVSVNF YKKNMNVTKP RSYYDEKEAT 240 KTSTCTANTP FSYMDFASPA SPGPCLDEQY LRSLLLASQE TQPPQLPKVM NNNDISSFLL 300 NMSSSDSSFL GGYTNQIGSS IDLTTAILAQ EQCPALVNLS QGYQDHQAFS HTLEFGHLTS 360 ASTSVGDQHQ NQKHHMLMES YYSVNLLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-55 | 15 | 173 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-55 | 15 | 173 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-55 | 15 | 173 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-55 | 15 | 173 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-55 | 15 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swm_B | 4e-55 | 15 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swm_C | 4e-55 | 15 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swm_D | 4e-55 | 15 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swp_A | 4e-55 | 15 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swp_B | 4e-55 | 15 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swp_C | 4e-55 | 15 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swp_D | 4e-55 | 15 | 173 | 20 | 172 | NAC domain-containing protein 19 |
4dul_A | 4e-55 | 15 | 173 | 17 | 169 | NAC domain-containing protein 19 |
4dul_B | 4e-55 | 15 | 173 | 17 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00170.1_g00016.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189353 | 1e-168 | AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018453435.1 | 0.0 | PREDICTED: protein FEZ-like | ||||
Swissprot | Q9ZVH0 | 1e-155 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A397YX86 | 0.0 | A0A397YX86_BRACM; Uncharacterized protein | ||||
STRING | Bra004403.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-147 | NAC family protein |
Publications ? help Back to Top | |||
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