PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00167.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SBP
Protein Properties Length: 964aa    MW: 106128 Da    PI: 8.8547
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00167.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.31.5e-40112188278
                              -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                      SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                              Cqv++C +dls ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  Rsa1.0_00167.1_g00004.1 112 CQVDNCMEDLSVAKDYHRRHKVCEVHSKATKALVGNQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNKRRRKTQP 188
                              **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.3E-33104173IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.966109186IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.15E-37110191IPR004333Transcription factor, SBP-box
PfamPF031103.9E-29112185IPR004333Transcription factor, SBP-box
SuperFamilySSF484031.24E-7732864IPR020683Ankyrin repeat-containing domain
CDDcd002046.51E-8733861No hitNo description
Gene3DG3DSA:1.25.40.202.7E-6733874IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 964 aa     Download sequence    Send to blast
MEEVAAPVSL HHPMARKRHP HWLVPSQPQP PKADWNPNMW EWDSQRFEAK PVDDGGAKEA  60
NNVHASSHEG GGEGRGLDLN LSSTPPPIIT RPNKRVKSGS PGSGGGGNYP KCQVDNCMED  120
LSVAKDYHRR HKVCEVHSKA TKALVGNQMQ RFCQQCSRFH LLSEFDEGKR SCRRRLAGHN  180
KRRRKTQPEE IVAPHNNTSN NANMDVMALL TALACAQGRN DASRPNGSLA VPQREQLLQI  240
LNKIKALPLP MDLVSKLNSI QVQTSAMNGA SSSSPSTMDL LAVLSTTLGS SGPEAIAFLS  300
QGGSGNKDSN DKTKLTSSTT NLEKRTLEFT STTSSSNPSP SQDTRPSLAL QLFTSSPENE  360
SQPTVAPSGK YYSSASSNPS PSSSSPVMQE FFPLQTSPET MRSNNNCRNS SPGPRTSNCL  420
PLELFGASTA NNPNYKVSKH HQSGYDASCG SDNSPPSLNS GDQDRTGKIV FKLLGKDPSQ  480
LPGTLRTEIY SWLSSIPSEM ESYIRPGCVV LSVYVAMSAS AWEQLEENLL QRVGSLVQDS  540
EFWSNTRFLV NTGRQLVSYK HGRIRLSKSW RTLSSPELIT MSPLAVVAGD ETTLVVKGRS  600
LTNDGISVRY AHMGNYSSME VTGTVHRSTK FDELTVNRFK VNGPSPGSLG RCFVEVENGF  660
RSDSFPLIIA SATICKELNS LEDEFHPNKV TEHSSDRPRS REEVLCFLNE LGWLFQKKRR  720
RSDFSLPRFK FLLVCSVERG YCSLVRTLLD MMVERNLNKE SLDMLAEIQL LNRAVKRRNT  780
KMAETLVHYS VDHTDKKFIF LPNITGPGDI TPLHLAASTS GSDDMIDVLT NDPQEIGLSC  840
WNTLIDACGQ TPFSYAAMRN NHSYNTLVAR KLADKRNGQI SLNIENGLRL SSEVKRSCNT  900
CASVALKYQK KVSSGSRRLF PTPIIHSMLA VATVCVCVCV FMHAFPIVRQ GSHFSWGGLD  960
YGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-31102185184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1772777RAVKRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00167.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484597.10.0PREDICTED: squamosa promoter-binding-like protein 16
SwissprotQ700C20.0SPL16_ARATH; Squamosa promoter-binding-like protein 16
TrEMBLA0A398ABP00.0A0A398ABP0_BRACM; Uncharacterized protein
STRINGBo2g091010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39992554
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76580.10.0SBP family protein