PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00159.1_g00036.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 720aa    MW: 82019.5 Da    PI: 6.8744
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00159.1_g00036.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.41.2e-1063447171373
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lLl+cA+avs +d+++a+ lL  +++++s++gd ++Rla+yf++ L+arla++++++y +l++++ts    ++ l+a++ ++ 
  Rsa1.0_00159.1_g00036.1 344 LRSLLLSCAQAVSVNDHRRAEGLLRLVRQHSSSYGDGTERLAHYFANSLEARLAGTGTQVYTSLSSKKTS---AADMLKAYQSYVS 426
                              689**************************************************************99999...9************ PP

                     GRAS  87 vsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168
                              v+P+ k++   aN+ I + +++   +++HiiDf+is+G+QW +L + L  R++++ +lRiTg++ p+ g   ++ + etg+rLak+
  Rsa1.0_00159.1_g00036.1 427 VCPFKKIGIAFANHSIQQLAKKTmpHTIHIIDFGISYGFQWHSLVHRLHWRRGSSCKLRITGIDLPQRGfrPANGVIETGHRLAKY 512
                              **********************9999*****************************************9999*************** PP

                     GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                              +++l+vpfe+n+ +a+++e+++le+L++++gE +aVn  ++  +lld++v+++s+rd vL+l+ +++P++++ +    ++n++ F+
  Rsa1.0_00159.1_g00036.1 513 CKKLNVPFEYNA-IAQKWETIKLEDLKLREGEFVAVNTLFRFRNLLDDTVAVDSPRDVVLRLIHKIRPNIFIPSILSGSYNAPFFV 597
                              ************.7************************************************************************ PP

                     GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                              +rf e ++++s+lfd+ +++l re+  r++ E+e+ grei+nvvaceg++r+er e++++W +r+ +aG++++p++++ +++ +l+
  Rsa1.0_00159.1_g00036.1 598 TRFREVMYHFSSLFDMCDTTLTREDPMRVVFEKEFYGREIMNVVACEGTARVERPESYKQWGSRMVRAGLRQLPVEKELVQKLRLM 683
                              ************************************************************************************** PP

                     GRAS 341 lrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                              + k + s+++ v+++ +++++gWk+r +++ S+W
  Rsa1.0_00159.1_g00036.1 684 VDKEYkSKEFDVDQDGNWFLQGWKGRLVYASSFW 717
                              *9998899************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.506318697IPR005202Transcription factor GRAS
PfamPF035144.1E-104344717IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MGSYYAGFLG SFDNFYQTEF SNLGNGFYVD DQPLLESPSL LPPLHPHPDP YPQQNLAAAD  60
ADDDLTDSVL QYISQVLMEE DMDDKPCMFH DALSLQAAER SLYEALGEKY PDSLPLPTTS  120
PLQLSHSHDE LSDITSSGHT SRTTTTTTTS SDWSFDSLEN NRPSWMQTPT PNNFVFQSTT  180
PSTRSSPNSG SNTVTRSSFS NDLVTNMFKD SNWALQFKRG VEEASKFLPR TTQLVIDENH  240
HHPHYVPYRI TGKKCHWRDE DDEHLPEERS KKQSAVYADD PELADMFEKI LLFGDPKENP  300
KCILNETSQK EPPTKAPQSP KGDITTAYSR GIKPSAYVKE IPDLRSLLLS CAQAVSVNDH  360
RRAEGLLRLV RQHSSSYGDG TERLAHYFAN SLEARLAGTG TQVYTSLSSK KTSAADMLKA  420
YQSYVSVCPF KKIGIAFANH SIQQLAKKTM PHTIHIIDFG ISYGFQWHSL VHRLHWRRGS  480
SCKLRITGID LPQRGFRPAN GVIETGHRLA KYCKKLNVPF EYNAIAQKWE TIKLEDLKLR  540
EGEFVAVNTL FRFRNLLDDT VAVDSPRDVV LRLIHKIRPN IFIPSILSGS YNAPFFVTRF  600
REVMYHFSSL FDMCDTTLTR EDPMRVVFEK EFYGREIMNV VACEGTARVE RPESYKQWGS  660
RMVRAGLRQL PVEKELVQKL RLMVDKEYKS KEFDVDQDGN WFLQGWKGRL VYASSFWVSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-413427173374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00159.1_g00036.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477386.10.0PREDICTED: scarecrow-like protein 33
RefseqXP_018477387.10.0PREDICTED: scarecrow-like protein 33
SwissprotP0C8830.0SCL33_ARATH; Scarecrow-like protein 33
TrEMBLA0A0D3C2S50.0A0A0D3C2S5_BRAOL; Uncharacterized protein
STRINGBo4g168030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein