PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00158.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SBP
Protein Properties Length: 949aa    MW: 107250 Da    PI: 8.2428
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00158.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.89.6e-41722798278
                              -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                      SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                              C v+gC++d+s+++eyh+rhkvC+vhsk+pvv++sg +qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  Rsa1.0_00158.1_g00006.1 722 CLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTISGDKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQP 798
                              **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142232.3E-2575203No hitNo description
PfamPF139761.3E-9345397IPR025724GAG-pre-integrase domain
SuperFamilySSF530981.77E-31369514IPR012337Ribonuclease H-like domain
PfamPF006651.6E-13406468IPR001584Integrase, catalytic core
Gene3DG3DSA:3.30.420.102.9E-24407514IPR012337Ribonuclease H-like domain
PROSITE profilePS5099417.796418515IPR001584Integrase, catalytic core
Gene3DG3DSA:4.10.1100.104.2E-32715783IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.847719796IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.19E-38720801IPR004333Transcription factor, SBP-box
PfamPF031101.5E-29722795IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 949 aa     Download sequence    Send to blast
MKSAKFEMEK FDGKIDYDMW RERLLVNLDL LDLTEALLSQ EKDMGRSESK LKDPSSKEEE  60
SDMNSTKKVD PLLAEKQRKV KSTIIMNVTD KILRKIVKEK TAAGMLKILD AQYMSLSLPN  120
RMYLKQRLYG YIINESMSIE SNIDEFLRII TDLGNIMVEF SDEDQAILLL MSLPKQFDQL  180
RDTLRYGKDT VTMDEVMNSI HSKQLEFSAN GKDNKNHGEV MYSKSQSRGR SNKRDSVTGV  240
EFIESLVVTE ANMVSTVDFN EIWILDTGCS FQMTPRRDWF TDLNENAGEG QFVSVKDVRY  300
VPQFSRNLKS LGALEKNGCS FISENGVLRV KKGCRTVSKA KREGNLYYLQ GEGYNGEVNT  360
VSVQDETDLW HSRLGHISQK GLNVLVRKGY LDKKKDQVFE KFVEWKLLVE NQTGLKVKKL  420
RTDNGLEFCN KEFDGLCSSN GIGSHKTIPY TPQQNGVVER MNRTILERVR SLLSESGLPK  480
VFWAEAVNTA VYLINRSQSY AIEDKVPEEV WSNIVLKLDH LRRFECICYY HSDDGKLKPR  540
AKKGIFIGYP GGVKGYKVWS LDDKRAVISR TSIYSGICSS CTFLHSPFPF SVQQACPSLS  600
DKKKKERQSI LQMDWNFKLS SGSFPDFEEE YVPDLTPIDA SVSFGGSSSS SPRLEPKGEF  660
SFDLKLGRNI VNSSSAFRNT EQVTCLKWKE STALAKPEAS RSSGSSKRTR GNATGNNQIP  720
LCLVDGCDSD FSNCREYHKR HKVCDVHSKT PVVTISGDKQ RFCQQCSRFH ALEEFDEGKR  780
SCRKRLDGHN RRRRKPQPDR IASHVFPTTS VGTPSSWGNG LVSLAMASGS SYGENQIKPD  840
IMFPETSSLN SRGKQFPFLQ EEVSSRTAFL CERMTSCVHD SDCALSLLSP SSSSTPHLLQ  900
PLLPFSQETV ETVFNQSGLF ENASAVSDGS VISGNEIVAL RQTFPFHWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-28713795284squamosa promoter binding protein-like 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1778795KRSCRKRLDGHNRRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00158.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41112759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-138SBP family protein