PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00156.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 496aa    MW: 56639.5 Da    PI: 7.1698
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00156.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.34e-06322346327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               + C++++ +G C +G +C+++H+p
  Rsa1.0_00156.1_g00008.1 322 VADCQYYLLYGRCFFGRSCRYNHPP 346
                              689********************96 PP
2zf-CCCH277.7e-09369391527
                              --SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                               C  +++tG+C+yG +C F+H+p
  Rsa1.0_00156.1_g00008.1 369 DCEQYLQTGQCSYGLKCWFNHPP 391
                              7********************96 PP
3zf-CCCH231.4e-07414435627
                              -SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                              C  +++ G+C+yG rC+F+H+p
  Rsa1.0_00156.1_g00008.1 414 CEQYLQKGQCSYGRRCRFNHPP 435
                              99******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.760.106.8E-6249225IPR023398Translation Initiation factor eIF- 4e-like
SuperFamilySSF554184.97E-6554228IPR023398Translation Initiation factor eIF- 4e-like
PfamPF016521.1E-4762216IPR001040Translation Initiation factor eIF- 4e
PROSITE patternPS008130116139IPR019770Eukaryotic translation initiation factor 4E (eIF-4E), conserved site
PROSITE profilePS5010313.582319347IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4319346IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-5364391IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.53364392IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-5367390IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6368391IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4370389IPR000571Zinc finger, CCCH-type
SMARTSM003560.31408435IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892408436IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5410435IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4413433IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-5414435IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006413Biological Processtranslational initiation
GO:0005737Cellular Componentcytoplasm
GO:0003743Molecular Functiontranslation initiation factor activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MAEEENLDPN TTSLIRLQQH VPAIKAICGG GGGEEGPSKG KGIMCGGKKS KSTTAIEPSH  60
SFQNSWTFWF DNPSSKSSQA TWGSSLRSLY TFATIEEFWS LYNNMHPPTK CVHGADIYCF  120
KDKIEPKWED PVCANGGKWT MMFPKATLES SWLNTLLALV GEQFEQGDVI CGAVLNFRTR  180
GDKISLWTKN AANKEAQLSI GKQWKELLGY TETIGFIFHE DAKTLDRNAK PQEESKEEVL  240
RKEISDRENS EMEIEEEAKE TDTRTEESTS IEETEGQDTD LFTSEAGDRT DWRRKRDHPS  300
DNATQMRHEL DQSSGHPVRT GVADCQYYLL YGRCFFGRSC RYNHPPRNQM GDHTVRPPSA  360
YQVRLGAKDC EQYLQTGQCS YGLKCWFNHP PLTERNQMRH EMVQPSPYPG ARHCEQYLQK  420
GQCSYGRRCR FNHPPAPRGK TRSYIPCPIK PSKPCKMLYQ PCPEKNSLSF QESSVKHHRP  480
EIDDRIQITK NLSLMY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2wmc_A2e-87602303173EUKARYOTIC TRANSLATION INITIATION FACTOR 4E
2wmc_B2e-87602303173EUKARYOTIC TRANSLATION INITIATION FACTOR 4E
2wmc_C2e-87602303173EUKARYOTIC TRANSLATION INITIATION FACTOR 4E
2wmc_D2e-87602303173EUKARYOTIC TRANSLATION INITIATION FACTOR 4E
2wmc_E2e-87602303173EUKARYOTIC TRANSLATION INITIATION FACTOR 4E
2wmc_F2e-87602303173EUKARYOTIC TRANSLATION INITIATION FACTOR 4E
2wmc_G2e-87602303173EUKARYOTIC TRANSLATION INITIATION FACTOR 4E
2wmc_H2e-87602303173EUKARYOTIC TRANSLATION INITIATION FACTOR 4E
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00156.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0686677e-45AC068667.6 Arabidopsis thaliana chromosome 1 BAC F15D2 genomic sequence, complete sequence.
GenBankCP0026847e-45CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.35e-23C3H family protein