PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00156.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 346aa    MW: 39637.7 Da    PI: 7.862
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00156.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.8e-106791327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                              + C f++++G C yG +C+F+H+p
  Rsa1.0_00156.1_g00007.1 67 VADCYFYLKNGRCGYGLSCRFNHPP 91
                             689********************97 PP
2zf-CCCH36.11.1e-11105129327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               + C+ +++tG+C+yG++C+F+H+p
  Rsa1.0_00156.1_g00007.1 105 ARDCKQYLQTGQCSYGPKCRFNHSP 129
                              589********************96 PP
3zf-CCCH35.91.2e-11143165527
                              --SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                               C+ +++tG+C+yG++C+F+H+p
  Rsa1.0_00156.1_g00007.1 143 DCKQYLQTGQCSYGPKCRFNHPP 165
                              5********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.0E-56491IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3386492IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-86791IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-56892IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915102130IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-5102129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6105130IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9105129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-7108129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699138166IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6138165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5143165IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9143165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-6144163IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.324172190IPR000571Zinc finger, CCCH-type
SMARTSM0035669174192IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
METEDAKETD TRTESTSMEE TEEQDTDLRT RESYGRTDGR RERDPRSAGE KKENATQSSE  60
YPARTGVADC YFYLKNGRCG YGLSCRFNHP PMRHEMVQPS PYPGARDCKQ YLQTGQCSYG  120
PKCRFNHSPA QVLPERVSLG AIDCKQYLQT GQCSYGPKCR FNHPPAPVLS QWVSRQNCKF  180
FQKGSCTYGS GSMSGDGAET MRQDTPRGKK RHGANSSARP WKRERQQAHD LEEQKQKKRE  240
VENLRIGPSV QSGEGGIQTE QRLEESPEDP NIKPQENPQE QADMERHNRE AQEKAQEERR  300
QQIDNARRES RLRLERMKPR ALTSNVDQLR EALPDIGIDR KEGDGF
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00156.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486806.10.0PREDICTED: zinc finger CCCH domain-containing protein 42-like
TrEMBLA0A0D3D6051e-167A0A0D3D605_BRAOL; Uncharacterized protein
STRINGBo7g045330.11e-168(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14832817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-23C3H family protein