PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00151.1_g00009.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 316aa    MW: 36372.6 Da    PI: 9.8104
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00151.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind48.72.1e-15151092101
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH.HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX. CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk.yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks. 85 
                              F k ly +++d++l++++sws++++sfv++d+ ef+++vLp+      nf+ F+  L+ YgF +vk ++++        +  h++ 
  Rsa1.0_00151.1_g00009.1  15 FYKGLYAVVDDPSLDSVVSWSKDKKSFVIWDPIEFQRRVLPQrRILSLNFSMFMADLKYYGFIRVKGSKHR-------YHIGHPKy 93 
                              8899************************************88467889*******************9988.......77778776 PP

                              XXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  86 Fkkgkkellekikrkk 101
                              F +gk  l++k++ ++
  Rsa1.0_00151.1_g00009.1  94 FVRGKPALMKKMQEER 109
                              9999999999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.3E-1311108IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.31E-1611106IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.0E-1912106IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS500619.0861374IPR000418Ets domain
PfamPF004474.8E-1715107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MHVPVTVTDD SLSSFYKGLY AVVDDPSLDS VVSWSKDKKS FVIWDPIEFQ RRVLPQRRIL  60
SLNFSMFMAD LKYYGFIRVK GSKHRYHIGH PKYFVRGKPA LMKKMQEERV HKFEQARAMR  120
KKAKARAMEL ADSLGVLRRR EEEEDDDKQD ACVNLYILTH LHCTLFRSYT LQQVGFIPKV  180
LRFSTSYNAD DESLIHMRFS GFVAFLLIRV FKVVAPVKMT FETYATCVAQ IQFNFWIFFS  240
NALCALALNL AIFLVIGRTG AVTIRVAGVL KDWILIVLST VIFPESTITG LNICAMWCRH  300
VQLDQSKGRE GVSNNC
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00151.1_g00009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411461e-70AC241146.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH072P15, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1817268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.14e-09Winged helix-turn-helix transcription repressor DNA-binding