PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00149.1_g00014.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family RAV
Protein Properties Length: 355aa    MW: 40342.6 Da    PI: 9.2107
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00149.1_g00014.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.6e-124492155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++ykGV +   +g W A+I+       +kr++lg+f +a eAa+a++ a  kl+g
  Rsa1.0_00149.1_g00014.1 44 TKYKGVVQQQ-NGHWGAQIYAD-----HKRIWLGTFKSAAEAAAAYDSASIKLRG 92
                             69****9888.8******9993.....4************************998 PP
2B389.91.9e-28178282189
                              EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 
                              f k+ltpsdv+k++rlv+pkk+a +h               gg    +++++++d+  r+W+++++y+k+s+++v+t+GW++Fvk+
  Rsa1.0_00149.1_g00014.1 178 FNKELTPSDVGKLNRLVIPKKHAVRHlpfitdereegetggGGGAVDDVEVVFYDRAMRQWKFRYCYWKSSQSFVFTRGWNGFVKE 263
                              89*****************************99988888885555699************************************** PP

                              HT--TT-EEEEEE-SS.SE CS
                       B3  72 ngLkegDfvvFkldgr.se 89 
                              ++Lke+D++vF+  +  s+
  Rsa1.0_00149.1_g00014.1 264 KNLKEKDVIVFYTCDVpSN 282
                              ************6554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.98E-1344104No hitNo description
PfamPF008471.4E-64492IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-1745102IPR001471AP2/ERF domain
SMARTSM003801.8E-1845108IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1545104IPR016177DNA-binding domain
PROSITE profilePS5103217.67545102IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.8E-31173276IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.54E-27176277IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-24177284No hitNo description
PROSITE profilePS5086311.885178291IPR003340B3 DNA binding domain
PfamPF023621.8E-25178283IPR003340B3 DNA binding domain
SMARTSM010197.5E-20178289IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MNILKEETSR HEANEANTRT DTSVSSDLRL AKRMKPTVSL TATTKYKGVV QQQNGHWGAQ  60
IYADHKRIWL GTFKSAAEAA AAYDSASIKL RGFDANSHRN FPWSEITVHE PDFQNNHTTE  120
AVLNMIRDST YLKKFSDHLQ VRSQMVAIAN INMVGSKQSL GGGGVQESTK CFSCTELFNK  180
ELTPSDVGKL NRLVIPKKHA VRHLPFITDE REEGETGGGG GAVDDVEVVF YDRAMRQWKF  240
RYCYWKSSQS FVFTRGWNGF VKEKNLKEKD VIVFYTCDVP SNFKTLEGQS NSFLMIDVDY  300
FTEKGSVEPK EVNKMVRNVS EEEMKTKNFF SSKLKEETKS EVKKGGFMLF GVRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-2517727413100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00149.1_g00014.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488108.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6880.0RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A3P5YW630.0A0A3P5YW63_BRACM; Uncharacterized protein
STRINGBo5g081270.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-163RAV family protein