PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00147.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 316aa    MW: 34908.8 Da    PI: 6.3112
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00147.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.41.5e-28147207259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              dD ++WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs++dp++++ tY+g+H+++
  Rsa1.0_00147.1_g00005.1 147 DDVFSWRKYGQKDILGAKYPRSYYRCTFRntqNCWATKQVQRSDDDPTIFDLTYKGTHTCS 207
                              8**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.172141204IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-27142207IPR003657WRKY domain
SuperFamilySSF1182907.85E-25145207IPR003657WRKY domain
SMARTSM007749.1E-39146208IPR003657WRKY domain
PfamPF031061.0E-25147206IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDMSNWEQKN LLSEGLVHGL KAAKQLQAEL GTAPSLSSSS LCLTTEMRET LLHQIVSSYE  60
KAIWMLNGSN IVHSPTAEMV NLAADPVAST GKVPESPTSI NGSPRSEEFL DGGSKDYNLS  120
SKKRKMLPKW TEQVRISPER GLEGPHDDVF SWRKYGQKDI LGAKYPRSYY RCTFRNTQNC  180
WATKQVQRSD DDPTIFDLTY KGTHTCSQGI RPPEKGKTAI SYPTYRDITN LTVRTNGNES  240
EAFSFPFTPP FYAYESDFGN GAGTFGHVGS SGPSNFTGLI STNTSTGSSP IFDVDFQFDP  300
TAEINTGLHT FLHDSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-18147206968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00147.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458950.10.0PREDICTED: probable WRKY transcription factor 41
SwissprotQ8H0Y81e-153WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLA0A078JI120.0A0A078JI12_BRANA; BnaCnng45760D protein
TrEMBLA0A0D3AT350.0A0A0D3AT35_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DR480.0A0A3P6DR48_BRAOL; Uncharacterized protein
STRINGBo2g109030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-154WRKY family protein
Publications ? help Back to Top
  1. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]