PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00137.1_g00017.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HSF

Protein Properties

Length: 473aa MW: 52684.3 Da PI: 6.2768

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00137.1_g00017.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.9	4.5e-35	27	117	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 Fl k+ye+++d++++e++sws+n+nsf+v+++ ef++ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F Rsa1.0_00137.1_g00017.1 27 FLVKTYEMVDDSSTDEIVSWSSNNNSFIVWNHAEFSRLLLPSYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFSNDDFI 103 9**************************************************************999.........***** PP XXXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrkk 101 k++k+ll++i+r+k Rsa1.0_00137.1_g00017.1 104 KDEKHLLKNIHRRK 117 **********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.2E-59	23	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.71E-35	23	116	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	5.4E-37	23	116	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	9.8E-20	27	50	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	6.7E-30	27	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.8E-20	65	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	66	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.8E-20	78	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MNGALGNSSA SVNNGGGGDG AGGPAPFLVK TYEMVDDSST DEIVSWSSNN NSFIVWNHAE 60 FSRLLLPSYF KHNNFSSFIR QLNTYGFRKI DPERWEFSND DFIKDEKHLL KNIHRRKPIH 120 SHSHPPVSSV DQERAALQEQ MDKLSREKAA IEAKLLKFKQ HKSTAKHNLD EMAEHVDHME 180 KRQEKLMSFL ETAMRNPTFI KNFGRKVEEL DVSAYSKKRR LPQVEQSKPP SEDSHLDDNS 240 SGSSRPESGN IFHQNFSSKL RLELSPAVSD MNMVSHSIQS SNEGASPKGS DPKTTQTRRE 300 GLPFAPEALE LADTGSCPGI LLLNDKTIME PLQQMITSSE ETDGSFSCHL NLTLASAPLP 360 DKTASQIAKT THKSQETGRV TELNFNSIET SAASEKNRGQ QEVAAGGGKQ ANAAPPARVN 420 DVFWEQFLTE RPGSSDNEEA SSTYRENPCE EPEEKRNGHV MSRNTKNIEQ LTL

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MNGALGNSSA SVNNGGGGDG AGGPAPFLVK TYEMVDDSST DEIVSWSSNN NSFIVWNHAE  60
FSRLLLPSYF KHNNFSSFIR QLNTYGFRKI DPERWEFSND DFIKDEKHLL KNIHRRKPIH  120
SHSHPPVSSV DQERAALQEQ MDKLSREKAA IEAKLLKFKQ HKSTAKHNLD EMAEHVDHME  180
KRQEKLMSFL ETAMRNPTFI KNFGRKVEEL DVSAYSKKRR LPQVEQSKPP SEDSHLDDNS  240
SGSSRPESGN IFHQNFSSKL RLELSPAVSD MNMVSHSIQS SNEGASPKGS DPKTTQTRRE  300
GLPFAPEALE LADTGSCPGI LLLNDKTIME PLQQMITSSE ETDGSFSCHL NLTLASAPLP  360
DKTASQIAKT THKSQETGRV TELNFNSIET SAASEKNRGQ QEVAAGGGKQ ANAAPPARVN  420
DVFWEQFLTE RPGSSDNEEA SSTYRENPCE EPEEKRNGHV MSRNTKNIEQ LTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-23	18	116	17	129	Heat shock factor protein 1
5d5v_B	1e-23	18	116	17	129	Heat shock factor protein 1
5d5v_D	1e-23	18	116	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00137.1_g00017.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018485252.1	0.0	PREDICTED: heat stress transcription factor A-5
Swissprot	Q94BZ5	0.0	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	M4EVB9	0.0	M4EVB9_BRARP; Uncharacterized protein
STRING	Bra032752.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10134	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	0.0	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]