PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00131.1_g00050.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 288aa MW: 31954.1 Da PI: 8.6259

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00131.1_g00050.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.8	2.1e-07	39	91	1	40
TSSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqc 40 r +WT+eE++++++a +++ +Wk+I +g +t q+ Rsa1.0_00131.1_g00050.1 39 RESWTEEEHDKFLEALQLYYYLlsekywplflrfdrDWKKIEDFVG-SKTVIQV 91 789**************988999*******************.9999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.04E-6	33	92	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.9E-4	38	92	IPR009057	Homeodomain-like
CDD	cd00167	1.84E-5	41	93	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MSSSPSRNPT SAEAPPSTDV AVEGSSKKVR KPYTITKSRE SWTEEEHDKF LEALQLYYYL 60 LSEKYWPLFL RFDRDWKKIE DFVGSKTVIQ VQKNGTVAHV PPPRPKRKAA HSYPQKASKN 120 APMQLQVSTS WDDASVLINR VISPQHEHAT LLGAQGMLFH DIGPKGILNV SSPSTSGVGS 180 SSRTISCSEV VAKQPPALHG VPDFAEVYSF IGSVFDPKTR LDHVEKLKQM DPINFETVLL 240 LMRNLIVNLS NPEFESSRKA LSSYEVNTEL PSVTTGSFCP NSTSDKSS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:21474993, ECO:0000269\|PubMed:21483796, ECO:0000269\|PubMed:23638299}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00131.1_g00050.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:22902701, ECO:0000269\|PubMed:23638299}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018434911.1	0.0	PREDICTED: protein REVEILLE 8-like isoform X1
Refseq	XP_018434912.1	0.0	PREDICTED: protein REVEILLE 8-like isoform X1
Refseq	XP_018434913.1	0.0	PREDICTED: protein REVEILLE 8-like isoform X1
Swissprot	Q8RWU3	1e-144	RVE8_ARATH; Protein REVEILLE 8
TrEMBL	A0A3P5ZCW2	1e-160	A0A3P5ZCW2_BRACM; Uncharacterized protein
STRING	Bra029778.1-P	1e-147	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9303	26	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09600.1	1e-132	MYB_related family protein

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Fogelmark K,Troein C Rethinking transcriptional activation in the Arabidopsis circadian clock. PLoS Comput. Biol., 2014. 10(7): p. e1003705 [PMID:25033214] Xing H, et al. LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors. Plant Signal Behav, 2015. 10(3): p. e1010888 [PMID:25848708] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]