PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00128.1_g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 184aa MW: 21101.1 Da PI: 8.4862 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 44 | 7.2e-14 | 31 | 124 | 2 | 94 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknr..atksgy 82 pG+r P+d+e+v+ +L+++v++ +++ v++ d y+++P+ +p ++ +++e +fF++r +g+r nr a +sg+ Rsa1.0_00128.1_g00012.1 31 IPGVRLAPKDSEVVHLFLQRRVQHLPINNYLVFDMEDFYDTHPQFIPLpqpHIFLDHQESWFFVERTM---QGQRVNRlvADNSGR 113 69************************9998889999********998434555557889999999876...5899***744569** PP NAM 83 Wkatgkdkevls 94 W + k ++++ Rsa1.0_00128.1_g00012.1 114 WVGQKK-YSIMK 124 *97766.44444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-11 | 26 | 117 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 13.007 | 30 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-6 | 32 | 124 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MWLPISSPVI IIDRPLCNST VKLLPTMDNV IPGVRLAPKD SEVVHLFLQR RVQHLPINNY 60 LVFDMEDFYD THPQFIPLPQ PHIFLDHQES WFFVERTMQG QRVNRLVADN SGRWVGQKKY 120 SIMKGAELKK KNNKPKRPSI KSLFEEDESS EGKTTHQGSF LNLLPTQMED PEREGSSKSS 180 SSGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00128.1_g00012.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |