PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00124.1_g00036.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ARF | ||||||||
Protein Properties | Length: 658aa MW: 72801.4 Da PI: 7.3705 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.5 | 1.4e-24 | 121 | 222 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g +W++++iyr++++r++lt+GW++Fv++++L +gD+ Rsa1.0_00124.1_g00036.1 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldynAEPPVQ--TILARDVHGDVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDS 204 89****************************985444444..8999***************************************** PP EEEEE-SSSEE..EEEEE-S CS B3 80 vvFkldgrsefelvvkvfrk 99 +vF+ + +++ l+v+++r+ Rsa1.0_00124.1_g00036.1 205 IVFM--RAESGDLCVGIRRA 222 ****..4489999*****97 PP | |||||||
2 | Auxin_resp | 111.8 | 6.7e-37 | 280 | 363 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a ++ FevvY+PrastseF+vk+ + ++a++++++ GmRfkmafetedss++++ +Gtv++vs +dp+rWpnS+Wr+L+ Rsa1.0_00124.1_g00036.1 280 AATLAINGRGFEVVYYPRASTSEFCVKALDARAAMRIPWCSGMRFKMAFETEDSSRISWfMGTVSAVSVSDPIRWPNSPWRLLQ 363 6778889999************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.23E-30 | 110 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-38 | 114 | 228 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.42E-22 | 119 | 221 | No hit | No description |
Pfam | PF02362 | 1.9E-22 | 121 | 222 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-22 | 121 | 223 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.267 | 121 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.4E-31 | 280 | 363 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 18.17 | 572 | 658 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 658 aa Download sequence Send to blast |
MINVMDPMKS GSEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DHVDFKNLPI 60 PPMVLCRVLA IKYMADPESD EVFAKLRLVP LKDDDHREYG DNGQVVEGEG FETNSEKTPS 120 FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYNAEPPVQT ILARDVHGDV WKFRHIYRGT 180 PRRHLLTTGW SNFVNQKKLV AGDSIVFMRA ESGDLCVGIR RAKRGGIGNG PEYSAGWNPI 240 GGSCGYSSLL REDESNSLRR SNCSLADRKG KVTAESVIEA ATLAINGRGF EVVYYPRAST 300 SEFCVKALDA RAAMRIPWCS GMRFKMAFET EDSSRISWFM GTVSAVSVSD PIRWPNSPWR 360 LLQVAWDEPD LLQNVKRVNP WLVELVSNVH PIPSFSPPRK KMRLPQHPDY NNLINSIPVP 420 SFPSNPLIRS NPLSSVLDNV PVGLQGARHN AHQYYGLSSS DLHHYYLNRP PPPPPQPSST 480 FPLSQPLGLR NIDSRNEKGF CFLTMGTTPC NDTESKKSQH IVLFGKLILP EEQISEKGST 540 DTASTSGGSK LSSSDEGSPC SNKAHDAAGL ETGHCKVFME SDDVGRTLDL SVLGSYEELS 600 RKLSDMFGIQ KAEMLSSVLY RDASGAIKYA GNEPFSEFLK TARRLTILTE QGRESVVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-76 | 9 | 384 | 43 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00124.1_g00036.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979478 | 0.0 | JN979478.1 Brassica rapa subsp. pekinensis auxin response factor 16-2 (ARF16-2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018477677.1 | 0.0 | PREDICTED: auxin response factor 16 | ||||
Swissprot | Q93YR9 | 0.0 | ARFP_ARATH; Auxin response factor 16 | ||||
TrEMBL | A0A3P5ZU72 | 0.0 | A0A3P5ZU72_BRACM; Auxin response factor | ||||
STRING | Bo7g114200.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |