PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00124.1_g00030.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 325aa    MW: 37187.6 Da    PI: 6.4095
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00124.1_g00030.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52e-125799754
                             HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                               Er+RR+++N++++ Lr+++P+      +Kl+Ka+i++  ++Y+++L
  Rsa1.0_00124.1_g00030.1 57 VSERNRRQKLNQRLFALRSVVPNI-----TKLDKASIVKDSIDYMQKL 99
                             57*********************7.....7***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.1965099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.22E-105399No hitNo description
SuperFamilySSF474594.45E-1654118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-1656116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-1356105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-105799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MENLEDEYKN YWETTMFFQN QELEFDSWPL EEAFSGSGDS SSPDGAATSP ASSKNVVSER  60
NRRQKLNQRL FALRSVVPNI TKLDKASIVK DSIDYMQKLI DQEKRLEAEI RELESQSILV  120
ENPTRDYDCI NNNFMENQQQ DPSYNNVTRS KKFRQMDYTS GSSIARVHNQ SLIEVLEMKV  180
TWMGERTVVV CITCSKRRET MLQLCKVLES LNLNIVTTNF SSFSSRLSTT LFLQDFIGAL  240
TPEKTPLTIQ RFTGPLQRHA SATHPSSSPH HFNRIASLDR NRELIQDPSQ QDSIEQTLTA  300
GHHPQKRSDD ARVKAGWLLT DKNAA
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00124.1_g00030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304821e-116AJ630482.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At4g29930.
GenBankAK1177301e-116AK117730.1 Arabidopsis thaliana At4g29930 mRNA for putative bHLH transcription factor (bHLH027), complete cds, clone: RAFL17-41-A21.
GenBankAK1762011e-116AK176201.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL23-07-N06.
GenBankAK1762761e-116AK176276.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL23-19-M11.
GenBankAK2282011e-116AK228201.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL14-65-D05.
GenBankBT0058691e-116BT005869.1 Arabidopsis thaliana At4g29930 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597451.11e-148PREDICTED: transcription factor bHLH27
RefseqXP_013703989.11e-148transcription factor bHLH27
SwissprotQ700E31e-134BH027_ARATH; Transcription factor bHLH27
TrEMBLA0A078IBJ41e-147A0A078IBJ4_BRANA; BnaC07g42240D protein
TrEMBLA0A0D3DGW31e-147A0A0D3DGW3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ETD11e-147A0A3P6ETD1_BRAOL; Uncharacterized protein
STRINGBo7g114110.11e-148(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128411829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.11e-106bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]