PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00122.1_g00023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 510aa MW: 57863 Da PI: 9.8651 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.6 | 1.3e-14 | 8 | 94 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 ffk l + s+ l++p f++++ g +e t +l++ s +Wevk+ + + + lt+GWkeF+ a++L+ gD+++F+ + Rsa1.0_00122.1_g00023.1 8 FFKPL--LPGFHSH-LTIPVAFFSKYiqG-T-NEYHTAKLRSdASKITWEVKV--EDG-Q--KLTDGWKEFALAHDLRIGDILIFRQE 85 66666..5667777.***********743.3.455689999868889******..333.2..4***********************77 PP SSSEE..EEEE CS B3 86 grsefelvvkv 96 +++ f +v++ Rsa1.0_00122.1_g00023.1 86 KNMAF--HVTL 94 76777..7766 PP | |||||||
2 | B3 | 65.8 | 6.5e-21 | 142 | 227 | 7 | 94 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 +++l+ + l +pk+f++++g+++ ++ +++l++e+gr W++ + +k sg++++++GW++F+ angLk+g + +Fkl++r ++ + Rsa1.0_00122.1_g00023.1 142 WPSSLRYDTLNIPKSFVRANGLETSCGGEIVLMNEKGRPWTLVI-NQKLSGTTYIRRGWRRFCIANGLKTGGVYTFKLIQRGGA-P 225 567889999***********************************.4777777***************************96444.5 PP EE CS B3 93 vv 94 v+ Rsa1.0_00122.1_g00023.1 226 VL 227 55 PP | |||||||
3 | B3 | 67.4 | 2e-21 | 266 | 349 | 7 | 92 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 + +l+ + l+lp kf +e+g++++++ +++l++e+gr+W++kl+ + + g++++t+GW++F++angL++g ++ +kl++ +++ l Rsa1.0_00122.1_g00023.1 266 SRATLRYDTLSLPVKFSRENGLDTRCG-EIVLMNEKGRTWKLKLKRKSSCGTMYITRGWRSFCSANGLRAGSSFPLKLIK-KGGAL 349 566778899**************9987.****************76666666*************************998.45444 PP | |||||||
4 | B3 | 57.5 | 2.4e-18 | 413 | 504 | 4 | 97 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ++++ +l++ +l+lp +f ++hg+++e +++tl d++g +W+ l+ + +s+r+ l +GW+eF kan +k+g++++ kl+++ + Rsa1.0_00122.1_g00023.1 413 LTLRPFNLEKYILYLPVPFSRSHGINEE--TKMTLLDKNGVKWSTDLRSEENSDRIRLVGGWQEFFKANCVKTGESIIVKLVWEGD 496 555666788889************9954..58***************************************************988 PP E..EEEEE CS B3 90 felvvkvf 97 +++v+ + Rsa1.0_00122.1_g00023.1 497 KRCVLDFS 504 87877765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.365 | 5 | 98 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.28E-18 | 6 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.34E-14 | 6 | 95 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 5.6E-21 | 7 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 7.8E-22 | 8 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-10 | 16 | 90 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.8E-19 | 129 | 228 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.81E-19 | 131 | 228 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.212 | 136 | 233 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-24 | 137 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-19 | 142 | 228 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.04E-16 | 146 | 229 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-19 | 253 | 346 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.9E-18 | 259 | 353 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 15.552 | 260 | 357 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-26 | 261 | 357 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-19 | 266 | 350 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.27E-20 | 269 | 353 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-18 | 402 | 497 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.86E-20 | 405 | 501 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.40E-16 | 409 | 504 | No hit | No description |
Pfam | PF02362 | 3.4E-16 | 410 | 504 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-20 | 410 | 507 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.634 | 410 | 506 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 510 aa Download sequence Send to blast |
MRMAHKRFFK PLLPGFHSHL TIPVAFFSKY IQGTNEYHTA KLRSDASKIT WEVKVEDGQK 60 LTDGWKEFAL AHDLRIGDIL IFRQEKNMAF HVTLLGPSAC ELQYESCSEE ENNLGNIPNK 120 KNSERQAESS SLGPSCFSAN IWPSSLRYDT LNIPKSFVRA NGLETSCGGE IVLMNEKGRP 180 WTLVINQKLS GTTYIRRGWR RFCIANGLKT GGVYTFKLIQ RGGAPVLRLS SIESESESEE 240 RNMEKIQRKK AESSSVDPSC FVANISRATL RYDTLSLPVK FSRENGLDTR CGEIVLMNEK 300 GRTWKLKLKR KSSCGTMYIT RGWRSFCSAN GLRAGSSFPL KLIKKGGALA LRLSPKETDE 360 EEDCSPKANE VKSLSTEPES NEESSQDEKK IKKHRSTWKA SSSSQSQNRF VTLTLRPFNL 420 EKYILYLPVP FSRSHGINEE TKMTLLDKNG VKWSTDLRSE ENSDRIRLVG GWQEFFKANC 480 VKTGESIIVK LVWEGDKRCV LDFSSKIKRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00122.1_g00023.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018484682.1 | 0.0 | PREDICTED: B3 domain-containing protein REM14-like | ||||
Swissprot | O23076 | 0.0 | REM15_ARATH; Putative B3 domain-containing protein REM15 | ||||
TrEMBL | A0A0D3C1U6 | 0.0 | A0A0D3C1U6_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g154840.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24645.1 | 0.0 | B3 family protein |
Publications ? help Back to Top | |||
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