PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00122.1_g00022.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 577aa    MW: 66400.2 Da    PI: 9.9368
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00122.1_g00022.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-1427116198
                              EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                              ffk l     + s+ l +p  f+++h  g +k  +   +l++ +s  +W+vk+      ++  l++GWkeF+ a++L++gD+v+F+
  Rsa1.0_00122.1_g00022.1  27 FFKPL--LPGFHSH-LKIPAAFFSKHieGRNK-HGNIAKLRSdTSDITWKVKI-----EDGLRLADGWKEFALAHDLRVGDIVIFR 103
                              66666..5666776.9***********65554.5567888876899*******.....55678*********************** PP

                              E-SSSEE..EEEEE- CS
                       B3  84 ldgrsefelvvkvfr 98 
                               ++++ f  +v++f 
  Rsa1.0_00122.1_g00022.1 104 QEKDMAF--HVTLFG 116
                              7776777..998875 PP
2B375.37e-24165248690
                              ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                       B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                              +++++l+ ++l++pk+f +++g++++++ +++l++e+g sW++ l+ +++ g+++lt+GW++F++ ngL++g f++Fkl++r ++
  Rsa1.0_00122.1_g00022.1 165 VTPSSLRYDMLYIPKSFSRANGLETRCG-EIVLMNEKGTSWTLALKRKNSCGTMYLTRGWRRFCRINGLRAGSFFTFKLIKRGGT 248
                              7899999****************99887.****************98888888**************************996443 PP
3B354.52.1e-17297391399
                              EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                       B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                              + ++++   k++rl+lp +f+++hg+++e  +++tl d++g +W+   + +k s+r+ l +GWkeF kan +k  ++++++l+++ 
  Rsa1.0_00122.1_g00022.1 297 TLTLKPWDVKRSRLYLPLRFTRRHGINEE--TKMTLLDKNGVKWSTDPRSEKPSDRIRLVGGWKEFFKANCVKIDESIMLRLIWEG 380
                              5555666777889************9954..58***************************************************99 PP

                              EE..EEEEE-S CS
                       B3  89 efelvvkvfrk 99 
                              ++++ +k+++k
  Rsa1.0_00122.1_g00022.1 381 DTSCILKFYSK 391
                              99888888776 PP
4B344.82.3e-143924691798
                              E--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                       B3  17 vlpkkfaeeh...ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                              ++p  f+++h         + t +l++  s  +W+vk+  +  ++r  lt+GWkeF+ a++L+ gD+v+F+ ++++ f  +v++f 
  Rsa1.0_00122.1_g00022.1 392 TIPVAFFSKHiegR--YDHNNTAKLRSdASEMTWKVKI--EDDGRR--LTEGWKEFALAHDLRIGDIVIFRQEKDMAF--HVTLFG 469
                              79*********653..445668888886899*******..777777..9**********************7776777..998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.47824118IPR003340B3 DNA binding domain
SuperFamilySSF1019368.04E-2024125IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-2324131IPR015300DNA-binding pseudobarrel domain
CDDcd100174.44E-1626115No hitNo description
SMARTSM010192.4E-2027118IPR003340B3 DNA binding domain
PfamPF023624.4E-935115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-22157246IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-21159252IPR015300DNA-binding pseudobarrel domain
CDDcd100172.27E-22160252No hitNo description
PROSITE profilePS5086316.088160257IPR003340B3 DNA binding domain
SMARTSM010191.3E-28161257IPR003340B3 DNA binding domain
PfamPF023621.2E-22164249IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-18288382IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-20292385IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.872295392IPR003340B3 DNA binding domain
SMARTSM010198.3E-16295383IPR003340B3 DNA binding domain
CDDcd100174.77E-15295388No hitNo description
PfamPF023621.4E-16295391IPR003340B3 DNA binding domain
CDDcd100175.82E-12383468No hitNo description
SMARTSM010197.4E-17385471IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-15392478IPR015300DNA-binding pseudobarrel domain
PfamPF023626.8E-10392468IPR003340B3 DNA binding domain
PROSITE profilePS5086311.646393471IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-21393483IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-7505572IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-7509573IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.431512577IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
METVSIEVQE KKGKTLTNFE NMANQHFFKP LLPGFHSHLK IPAAFFSKHI EGRNKHGNIA  60
KLRSDTSDIT WKVKIEDGLR LADGWKEFAL AHDLRVGDIV IFRQEKDMAF HVTLFGPSCC  120
EIQYGSCLDN KNKLVKIQSK KKVEKNTIRE VESCTLHPSC YVANVTPSSL RYDMLYIPKS  180
FSRANGLETR CGEIVLMNEK GTSWTLALKR KNSCGTMYLT RGWRRFCRIN GLRAGSFFTF  240
KLIKRGGTLI LRKSPSSTES EDNSEDDEES NQDEKSFKKT RSTWKPSSSP IQNLFLTLTL  300
KPWDVKRSRL YLPLRFTRRH GINEETKMTL LDKNGVKWST DPRSEKPSDR IRLVGGWKEF  360
FKANCVKIDE SIMLRLIWEG DTSCILKFYS KTIPVAFFSK HIEGRYDHNN TAKLRSDASE  420
MTWKVKIEDD GRRLTEGWKE FALAHDLRIG DIVIFRQEKD MAFHVTLFGP SCCEIQYGSC  480
IDQDNNREKI PKKKNPNREE AESSCFTTQS RFVTLTIKPS DFKNSRLYLP MAFTKNSGIN  540
AKTKLALLDE NGVKWSTDLR SEYNGKRIRM IGGLSTC
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00122.1_g00022.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484684.10.0PREDICTED: B3 domain-containing protein REM14-like
SwissprotO230761e-109REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLM4ETE70.0M4ETE7_BRARP; Uncharacterized protein
STRINGBra032078.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-105B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]