PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00122.1_g00017.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 321aa    MW: 34874.7 Da    PI: 10.4947
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00122.1_g00017.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.4e-31244302360
                              -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                              D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +dp+++++tYegeH+h+k
  Rsa1.0_00122.1_g00017.1 244 DEYSWRKYGQKPIKGSPHPRGYYKCSTFrGCPARKHVERALDDPTMLIVTYEGEHRHQK 302
                              9************************8766****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.7E-16191240IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.9E-33230302IPR003657WRKY domain
PROSITE profilePS5081130.113237303IPR003657WRKY domain
SuperFamilySSF1182904.84E-26241302IPR003657WRKY domain
SMARTSM007741.5E-36242302IPR003657WRKY domain
PfamPF031067.6E-27244301IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MTVDIMRFPK MEDQTAIQEA ASQGLKSMEH MIRLLSNRPE DRNVDCSEIT DFTVSKFKKV  60
ISLLNRTGHA RFRRGPVQSS PSSSSSSAAA PPPPPPVSQP SPPAPVLTPG SFVQLHQQSL  120
TLDFTKPSVF GAKTKSTEFA KESFSVSSNS SFMSSAITGD GSVSKGSSIF LAPSAPVASS  180
GKPPLAGLPY RKRCFEHDHS QNFSGKISAS GSGKCHCKKS KKNRMKRSVR VPAISAKIAD  240
IPVDEYSWRK YGQKPIKGSP HPRGYYKCST FRGCPARKHV ERALDDPTML IVTYEGEHRH  300
QKSAMNENIS SSLVFGSGLN G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-20230300271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00278DAPTransfer from AT2G24570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00122.1_g00017.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3841020.0FJ384102.1 Brassica napus cultivar Westar WRKY transcription factor 17 (WRKY17) mRNA, WRKY17-2 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477671.10.0PREDICTED: probable WRKY transcription factor 17
SwissprotQ9SJA81e-175WRK17_ARATH; Probable WRKY transcription factor 17
TrEMBLA0A397ZLJ50.0A0A397ZLJ5_BRACM; Uncharacterized protein
STRINGBra032084.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25082772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24570.11e-153WRKY DNA-binding protein 17
Publications ? help Back to Top
  1. Ali MA,Wieczorek K,Kreil DP,Bohlmann H
    The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots.
    PLoS ONE, 2014. 9(7): p. e102360
    [PMID:25033038]
  2. Ali MA, et al.
    Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis.
    J. Plant Physiol., 2018. 226: p. 12-21
    [PMID:29689430]