PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00121.1_g00044.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 271aa MW: 30451.4 Da PI: 8.5535

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00121.1_g00044.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.6	1e-52	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrF Ptdeel+v+yL++kv+g +++l ++i ++d+yk++PwdLp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkat Rsa1.0_00121.1_g00044.1 14 LPPGFRFYPTDEELLVQYLCRKVAGYHFSL-QIIGDIDLYKFDPWDLPSKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKAT 98 79*************************9.89***********8777899*************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+dk ++s +g+ vg+kk Lvfy g+apkg+kt+W+mheyrl Rsa1.0_00121.1_g00044.1 99 GTDKVITS-DGHRVGIKKALVFYAGKAPKGTKTNWIMHEYRL 139 ***9.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-67	9	162	IPR003441	NAC domain
PROSITE profile	PS51005	60.917	14	162	IPR003441	NAC domain
Pfam	PF02365	4.2E-26	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MGVREKDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGYH FSLQIIGDID LYKFDPWDLP 60 SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVITSDGHR VGIKKALVFY 120 AGKAPKGTKT NWIMHEYRLI EHSRSHGSSK LDDWVLCRIY YKKMSGSQQR QAVVAPVQAC 180 LEDQSTNVSP SSSSSQLDDV LDSFPEMKDG SFNLPRMNSL RTILNGNFDW ASLAGLNPIP 240 ELAPALELSN YGGYQSFQSA ESGCRNSHFA G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-105	1	169	7	174	NAC domain-containing protein 19
3swm_B	1e-105	1	169	7	174	NAC domain-containing protein 19
3swm_C	1e-105	1	169	7	174	NAC domain-containing protein 19
3swm_D	1e-105	1	169	7	174	NAC domain-containing protein 19
3swp_A	1e-105	1	169	7	174	NAC domain-containing protein 19
3swp_B	1e-105	1	169	7	174	NAC domain-containing protein 19
3swp_C	1e-105	1	169	7	174	NAC domain-containing protein 19
3swp_D	1e-105	1	169	7	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269\|PubMed:15319476}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00121.1_g00044.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269\|PubMed:15319476, ECO:0000269\|Ref.7}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC966756	0.0	KC966756.1 Brassica napus NAC transcription factor 72 (NAC72.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018447063.1	0.0	PREDICTED: NAC domain-containing protein 72-like
Swissprot	Q93VY3	1e-170	NAC72_ARATH; NAC domain-containing protein 72
TrEMBL	A0A078DPW4	1e-175	A0A078DPW4_BRANA; NAC transcription factor 72
TrEMBL	A0A398ATJ7	1e-175	A0A398ATJ7_BRACM; Uncharacterized protein
TrEMBL	M4EC44	1e-175	M4EC44_BRARP; Uncharacterized protein
STRING	Bra026353.1-P	1e-176	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1435	27	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	1e-154	NAC family protein

Publications ? help Back to Top
Zhu X, et al. Jasmonic acid promotes degreening via MYC2/3/4- and ANAC019/055/072-mediated regulation of major chlorophyll catabolic genes. Plant J., 2015. 84(3): p. 597-610 [PMID:26407000] Li S, et al. The role of ANAC072 in the regulation of chlorophyll degradation during age- and dark-induced leaf senescence. Plant Cell Rep., 2016. 35(8): p. 1729-41 [PMID:27154758] Ye H, et al. RD26 mediates crosstalk between drought and brassinosteroid signalling pathways. Nat Commun, 2017. 8: p. 14573 [PMID:28233777]