PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00121.1_g00037.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NZZ/SPL | ||||||||
Protein Properties | Length: 325aa MW: 35173.2 Da PI: 8.945 | ||||||||
Description | NZZ/SPL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NOZZLE | 544.8 | 2e-166 | 14 | 325 | 3 | 314 |
NOZZLE 3 tslffmstdqnsvrnpnellrntrlvvnssgeirte.tkksrgrkpgsktaqqkqkkptlrgmgvaklerfiieeekkklvvat.v 86 +sl fmst+qn vrnpnell nt+ + +geirte +kksrgrkpgskt+qq+ kkptlrgmgvaklerfi+eeekkk+vv++ + Rsa1.0_00121.1_g00037.1 14 SSLSFMSTNQNPVRNPNELLGNTYQL--VNGEIRTEpPKKSRGRKPGSKTGQQNLKKPTLRGMGVAKLERFIAEEEKKKMVVTGgE 97 699********************987..58******99******************************************876423 PP NOZZLE 87 ....gdtssvaaisntatrlpvpvdrgvvlqgfps........slgs...srilcggvgsgqvmidpvispwgfvetsatthelss 157 gdts aa++n+atr+p drgvvlqgfps slg+ sr+lcgg+gsgq++idpv+spwgfvet++ helss Rsa1.0_00121.1_g00037.1 98 ggggGDTS--AASPNSATRFP---DRGVVLQGFPSygggptntSLGGysrSRFLCGGAGSGQIVIDPVCSPWGFVETTT--HELSS 176 33227899..***********...**********************99999*************************976..***** PP NOZZLE 158 isnpqmynassnnrcdtcfkkkrldgdqnnvvrsngggfskytmi..pppmngydeyllqsdhhqrsqgflydqriaraasvsaas 241 i+npqmynassnn+cdtcfkkkrldgdq nvvrsngggfskytm+ ppmngyde ll++d qrsqgf+ydqriar+a s Rsa1.0_00121.1_g00037.1 177 IPNPQMYNASSNNHCDTCFKKKRLDGDQ-NVVRSNGGGFSKYTMMipHPPMNGYDE-LLPPD--QRSQGFFYDQRIARSA-----S 253 ****************************.***************99769*******.*****..***************9.....9 PP NOZZLE 242 asinpyfneatnltgsreefgsvlegnprngsrgvkeyeffpgkydervskvakvaslvgdcspn..tidlslkl 314 as+npyfneatnltgsreefg v nprng+rgvkeyeffpgkyd++++k+++va++vg+cspn tidlslkl Rsa1.0_00121.1_g00037.1 254 ASFNPYFNEATNLTGSREEFGCV---NPRNGTRGVKEYEFFPGKYDDFQGKSFPVATSVGECSPNasTIDLSLKL 325 9**********************...************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF08744 | 1.0E-173 | 14 | 325 | IPR014855 | Plant transcription factor NOZZLE |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MATSLSFMST DQNSSLSFMS TNQNPVRNPN ELLGNTYQLV NGEIRTEPPK KSRGRKPGSK 60 TGQQNLKKPT LRGMGVAKLE RFIAEEEKKK MVVTGGEGGG GGDTSAASPN SATRFPDRGV 120 VLQGFPSYGG GPTNTSLGGY SRSRFLCGGA GSGQIVIDPV CSPWGFVETT THELSSIPNP 180 QMYNASSNNH CDTCFKKKRL DGDQNVVRSN GGGFSKYTMM IPHPPMNGYD ELLPPDQRSQ 240 GFFYDQRIAR SASASFNPYF NEATNLTGSR EEFGCVNPRN GTRGVKEYEF FPGKYDDFQG 300 KSFPVATSVG ECSPNASTID LSLKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator of sporocyte development (PubMed:10465788). Acts as an adapter-like transcriptional repressor recruiting TPL/TPR corepressors to inhibit TCP transcription factors (PubMed:25378179). Required for nucellus and embryo sac development (PubMed:10500234). Plays a central role in patterning both the proximal-distal and the adaxial-abaxial axes during ovule development (PubMed:12183381). Involved in establishing the prospective chalaza of the ovule and in controlling the cell number and the length of the funiculus, and is required for the development of the integuments (PubMed:10976054). Required, with BEL1, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). Involved in controlling stamen identity (PubMed:19726570). May also regulate the morphology of lateral organs by repressing auxin production (PubMed:18557819). {ECO:0000269|PubMed:10465788, ECO:0000269|PubMed:10500234, ECO:0000269|PubMed:10976054, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:18557819, ECO:0000269|PubMed:19726570, ECO:0000269|PubMed:22786869, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00121.1_g00037.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by the transcription factor AGAMOUS (PubMed:15254538). Regulated by ATXR3/SDG2 via chromatin methylation (PubMed:21037105). Triggered by TGA9 AND TGA10 in anthers (PubMed:20805327). {ECO:0000269|PubMed:15254538, ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:21037105}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ358088 | 0.0 | DQ358088.1 Brassica juncea sporocyteless (SPL) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018469400.1 | 0.0 | PREDICTED: protein SPOROCYTELESS | ||||
Swissprot | O81836 | 1e-121 | SPL_ARATH; Protein SPOROCYTELESS | ||||
TrEMBL | A0A398AU96 | 0.0 | A0A398AU96_BRACM; Uncharacterized protein | ||||
STRING | Bra026359.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13435 | 18 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27330.1 | 1e-124 | sporocyteless (SPL) |