PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00117.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 137aa    MW: 15223.6 Da    PI: 4.9908
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00117.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-181262255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55
                             +y+GVr ++ +g+++AeIr       ++ +r++lg+f tae+Aa+a+++a+ +++g
  Rsa1.0_00117.1_g00008.1 12 KYRGVRKRP-WGKYAAEIRN----SaRHgARVWLGTFNTAEDAARAYDRAAFSMRG 62
                             8********.*******999....33236*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.00E-191271No hitNo description
SuperFamilySSF541717.19E-231272IPR016177DNA-binding domain
SMARTSM003807.9E-351276IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-311272IPR001471AP2/ERF domain
PROSITE profilePS5103223.7231270IPR001471AP2/ERF domain
PfamPF008475.5E-141262IPR001471AP2/ERF domain
PRINTSPR003671.5E-111324IPR001471AP2/ERF domain
PRINTSPR003671.5E-113652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MEHGVSNTNE VKYRGVRKRP WGKYAAEIRN SARHGARVWL GTFNTAEDAA RAYDRAAFSM  60
RGQKAILNFP HEYPMMTDGP SGRSENVVAS SSSQFSGTGG SSVKEVIEFE YLDDSLLEEL  120
LEGGESYNQD DQNDANH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-381211614114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00373DAPTransfer from AT3G23220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00117.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438400.14e-99PREDICTED: ethylene-responsive transcription factor ERF095-like
SwissprotQ9LTC62e-47ERF95_ARATH; Ethylene-responsive transcription factor ERF095
TrEMBLA0A0D3D5K14e-66A0A0D3D5K1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ELV94e-66A0A3P6ELV9_BRAOL; Uncharacterized protein
STRINGBo7g040820.16e-67(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.12e-38ERF family protein
Publications ? help Back to Top
  1. Quan R, et al.
    EIN3 and SOS2 synergistically modulate plant salt tolerance.
    Sci Rep, 2017. 7: p. 44637
    [PMID:28300216]