PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00113.1_g00022.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 349aa    MW: 40076.8 Da    PI: 6.1064
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00113.1_g00022.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.63e-50101521129
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyat 70 
                              lppGfrFhP+deelv++yL++k+++k+           +          + e+d++ +ePw+Lp  +k + kewyfFs rd+kyat
  Rsa1.0_00113.1_g00022.1  10 LPPGFRFHPSDEELVCHYLCNKIRAKSdhgdvedD---DvdealkgasDLVEIDLHICEPWQLPDVAKLNAKEWYFFSFRDRKYAT 92 
                              79***********************9976655441...1556666764699*************87788999************** PP

                      NAM  71 gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                              g r+nrat sgyWkatgkd++v++  +++lvg++ktLvfy++rap+g kt+W+mhe+rle
  Rsa1.0_00113.1_g00022.1  93 GYRTNRATVSGYWKATGKDRTVMDPrTSQLVGMRKTLVFYRNRAPNGIKTTWIMHEFRLE 152
                              ************************967888***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-578170IPR003441NAC domain
PROSITE profilePS5100553.87710170IPR003441NAC domain
PfamPF023651.1E-2611151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGLKDIGSKL PPGFRFHPSD EELVCHYLCN KIRAKSDHGD VEDDDVDEAL KGASDLVEID  60
LHICEPWQLP DVAKLNAKEW YFFSFRDRKY ATGYRTNRAT VSGYWKATGK DRTVMDPRTS  120
QLVGMRKTLV FYRNRAPNGI KTTWIMHEFR LECPNMPPKE DWVLCRVFNK GRDLSLQDSN  180
YDNDHQTQRL EVNDAPDLNY APNYNNQLQP LLSSPPSTTI DPPHHHDQWE QLMKQPSRII  240
DHPCHHHCQH QSTCGWEQMM IGSMSSSSSH GPDHESLHNL LYADKNNSVN IAADHHDQNY  300
EKILLPSYIA SLDHDKTCMG SSFDIGMISD LHMECAGLSF ETENLLAFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-441017017165NO APICAL MERISTEM PROTEIN
1ut4_B1e-441017017165NO APICAL MERISTEM PROTEIN
1ut7_A1e-441017017165NO APICAL MERISTEM PROTEIN
1ut7_B1e-441017017165NO APICAL MERISTEM PROTEIN
4dul_A1e-441017017165NAC domain-containing protein 19
4dul_B1e-441017017165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00113.1_g00022.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382740.0KF738274.1 Brassica napus NAC transcription factor 74-2 (NAC74-2.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478963.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBLA0A0A7DNN50.0A0A0A7DNN5_BRANA; NAC transcription factor 74-2
TrEMBLA0A397L7880.0A0A397L788_BRACM; Uncharacterized protein
STRINGBra024194.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.10.0NAC domain containing protein 74