PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00113.1_g00021.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 306aa MW: 33908.1 Da PI: 9.4046

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00113.1_g00021.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.2	2e-33	60	201	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 lp+G++F+P+d+e++ +L+ kv+++ ++++ +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r++ Rsa1.0_00113.1_g00021.1 60 LPAGVKFDPSDQEVL-GHLEGKVRDDArklhplIDEFIrTIDGEnGICYTHPEKLP-GVSKDGTVRHFFHRPSKAYTTGTRKRRKV 143 799********99.89**9996665442222223554445******.666777899**************74 PP NAM 79 k.......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + + +W++tgk+++vl+ +g+++g kk+Lv+y g+++k+ekt+Wvmh+y+l Rsa1.0_00113.1_g00021.1 144 HtdsevggETRWHKTGKTRPVLT-GGRVKGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 201 43455555778********.9*********6658999**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.24E-37	54	220	IPR003441	NAC domain
PROSITE profile	PS51005	33.19	60	220	IPR003441	NAC domain
Pfam	PF02365	1.1E-14	61	201	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MTWCNDSSDV QTVETIIIPS PTVVESPEAS FQVSCHKTCP SCGHKFKFHE QAGIHDLPGL 60 PAGVKFDPSD QEVLGHLEGK VRDDARKLHP LIDEFIRTID GENGICYTHP EKLPGVSKDG 120 TVRHFFHRPS KAYTTGTRKR RKVHTDSEVG GETRWHKTGK TRPVLTGGRV KGYKKILVLY 180 TNYGKQKKPE KTNWVMHQYH LGTNEEEKEG ELVVSKIFYQ TQPRQCGGSL AAAATEKERP 240 YLHGHHLGGG GTGSRHLYHK NGNVKGTGGG GSARASEYYN NIPAIISFNQ SGIQNHLVHG 300 TQPFIP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00113.1_g00021.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018481908.1	0.0	PREDICTED: NAC domain-containing protein 73-like isoform X1
Swissprot	O49459	0.0	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	M4E5Z3	0.0	M4E5Z3_BRARP; Uncharacterized protein
STRING	Bra024197.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2012	28	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	0.0	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]