PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00111.1_g00068.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 191aa    MW: 21854.5 Da    PI: 4.7117
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00111.1_g00068.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.26.7e-211257449
                             -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             ++   rqvtfskRr+g++KKA+EL +LC+ae+ v++fs+ gk y y
  Rsa1.0_00111.1_g00068.1 12 QDMNTRQVTFSKRRTGLFKKASELATLCNAEIGVVVFSPGGKPYSY 57
                             56778*************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.3E-34160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.693161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-27280IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-19323IPR002100Transcription factor, MADS-box
PfamPF003192.8E-241257IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-193859IPR002100Transcription factor, MADS-box
Gene3DG3DSA:1.10.601.107.2E-674171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MGRRKIKMEM VQDMNTRQVT FSKRRTGLFK KASELATLCN AEIGVVVFSP GGKPYSYGKP  60
NLDAVTERFM RECDDDDSDS GDEEEEEEEE EEEEERGGKS RPKTKKMNER LDCLKREIEA  120
EKKRGEKVQA KLESAGDERF EKKPIEELTM DELREYMDKL QAVHGRIQCQ ADAMHASSCL  180
VFLSGDKASV E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-15169169MEF2 CHIMERA
6byy_B3e-15169169MEF2 CHIMERA
6byy_C3e-15169169MEF2 CHIMERA
6byy_D3e-15169169MEF2 CHIMERA
6bz1_A4e-15169169MEF2 CHIMERA
6bz1_B4e-15169169MEF2 CHIMERA
6bz1_C4e-15169169MEF2 CHIMERA
6bz1_D4e-15169169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00111.1_g00068.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479885.11e-137PREDICTED: agamous-like MADS-box protein AGL29
SwissprotO647035e-89AGL29_ARATH; Agamous-like MADS-box protein AGL29
TrEMBLA0A3P6C9151e-100A0A3P6C915_BRAOL; Uncharacterized protein
STRINGBra021910.1-P1e-101(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-84AGAMOUS-like 29
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]