PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00111.1_g00032.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 198aa    MW: 22156 Da    PI: 8.8232
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00111.1_g00032.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97e-2070119356
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                              y+GVr+++ +g+++AeIrdp   + + +r++lg+f taeeAa a+++a+ +++g+
  Rsa1.0_00111.1_g00032.1  70 YRGVRQRP-WGKYAAEIRDP---N-KaARVWLGTFNTAEEAALAYDKAAFEFRGH 119
                              9*******.**********9...3.35*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.16E-2269127IPR016177DNA-binding domain
SMARTSM003809.5E-3769132IPR001471AP2/ERF domain
PROSITE profilePS5103223.72369126IPR001471AP2/ERF domain
CDDcd000181.21E-3369128No hitNo description
Gene3DG3DSA:3.30.730.101.1E-3269127IPR001471AP2/ERF domain
PRINTSPR003672.4E-117081IPR001471AP2/ERF domain
PfamPF008473.8E-1470119IPR001471AP2/ERF domain
PRINTSPR003672.4E-1192108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MPSGKRPLSP EPMAQKREEK EDLCRCSTLS ESDVSAFVSE LTDKPIPPSM ASSSSSLTPQ  60
EQRISRQGNY RGVRQRPWGK YAAEIRDPNK AARVWLGTFN TAEEAALAYD KAAFEFRGHK  120
AKLNFPEHIL INSTHHCYPS TATSHDPIII TPVPPVAPDI LLDQYGKFLQ GNRPRLEESE  180
NMRSLKSEGV HLGFRPRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-2669133568ATERF1
3gcc_A8e-2669133568ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00111.1_g00032.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892921e-138AC189292.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026E08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485116.11e-134PREDICTED: ethylene-responsive transcription factor ERF112-like isoform X1
SwissprotP930076e-80EF112_ARATH; Ethylene-responsive transcription factor ERF112
TrEMBLA0A3P6C8011e-107A0A3P6C801_BRACM; Uncharacterized protein
STRINGBra021871.1-P1e-107(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.16e-67ERF family protein