PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00108.1_g00079.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 765aa    MW: 85742.7 Da    PI: 8.269
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00108.1_g00079.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.64.7e-18374473198
                              EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 
                              f+k+l+ sd+++ gr+vlpkk+ae++  +++++ ++ lt+ d++g++W++++++  +++s++y+l+ G     ++ +L++gD+v+F
  Rsa1.0_00108.1_g00079.1 374 FEKILSVSDAGRVGRMVLPKKCAEAFlpQISQTDGVPLTVHDSTGKEWTFQFRFwfNNNSRMYFLE-GVTPCIQSMQLQAGDTVIF 458
                              89**************************88899999****************99899999999999.******************* PP

                              EE-SSSEE..EEEEE- CS
                       B3  83 kldgrsefelvvkvfr 98 
                              ++++  e++l +++++
  Rsa1.0_00108.1_g00079.1 459 SRID-PEKKLIMGFRK 473
                              *887.55555666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.1E-28370477IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-20371473IPR015300DNA-binding pseudobarrel domain
CDDcd100176.70E-22372473No hitNo description
SMARTSM010192.0E-16374475IPR003340B3 DNA binding domain
PfamPF023623.3E-15374473IPR003340B3 DNA binding domain
PROSITE profilePS5086311.11374475IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MTPSSYSTRF CFNRECPDFN RHECYRPGWR LRNGDFADLC SRCAFIWGNH LFNLMLLMAL  60
RSAYEQGKFC DIFHQRASGW RCCESCGKRI HCGCIVSASA FMLLDAGGIE CLTCARKKVY  120
VGPNFRPPPS FLYQSPIAEK FNDMSLDWSS SARSYRPPNL SGPSILQYNL HNRGEGYEFN  180
QPTSRDKATA YLTEKQRGMN HLMGKLTSLN SNNHSSSILY NQKPGPNCKV PTCPNVNDYH  240
PLISLKEGPL GAQRAFPVTT PIETNGHLGL DERYLWHKAN SSPLSHLHND LNTGAPLESK  300
NLNFGIHLDT PGKYQVVPRY CPKVPYKNQV LQNLSNEYPS CLLSILKCPF LLFCYFSLLA  360
FGVNKSVSVV TPLFEKILSV SDAGRVGRMV LPKKCAEAFL PQISQTDGVP LTVHDSTGKE  420
WTFQFRFWFN NNSRMYFLEG VTPCIQSMQL QAGDTVIFSR IDPEKKLIMG FRKASVAQSS  480
DQETGLNNNR ESSTNGDAEP IDKHPPTEKK KSSMTTTRSK RQKVEKGDHS ELKLTWEEAQ  540
GFILPPPNLT PSITTIEGIE FEEYEDAPVI GKPNTGLGST CSANGGLLAE QDDEEAKDEA  600
EGLLTSPKST SKHPRHRNGC TCIVCIQSPS GASPKHGRRC SCTVCDTVRR RRETLLLRKK  660
KQQIEIENKA RKELESPNSD EELHQSANNS GTTSKNHEQR HAPPSKAQID LNFQPERDEE  720
SLSPSNTTTT KDKSLRHDET SCKPPSSSSA HSRHHHKLHV DFADS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6fas_A1e-503704755110B3 domain-containing transcription repressor VAL1
6fas_B1e-503704755110B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1648659RRRRETLLLRKK
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in plant development. {ECO:0000269|PubMed:17158584}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00108.1_g00079.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0322985e-50KF032298.1 Leavenworthia alabamica pop-variant Russellville self-incompatibility gene locus, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018471232.10.0PREDICTED: B3 domain-containing transcription factor VAL3 isoform X2
SwissprotO654200.0VAL3_ARATH; B3 domain-containing transcription factor VAL3
TrEMBLA0A3P5Z3T90.0A0A3P5Z3T9_BRACM; Uncharacterized protein
STRINGBra013535.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.10.0VP1/ABI3-like 3