PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00105.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 879aa    MW: 99351.1 Da    PI: 6.1773
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00105.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.45.1e-08280302326
                              S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                               ++C+ffa+ G+C++Gd C F+H 
  Rsa1.0_00105.1_g00008.1 280 IARCKFFAE-GFCPFGDECWFSHH 302
                              579******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-5276304IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5277303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892278304IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-6279302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5279302IPR000571Zinc finger, CCCH-type
SMARTSM006453.1E-4494711IPR000668Peptidase C1A, papain C-terminal
PfamPF001128.3E-10501697IPR000668Peptidase C1A, papain C-terminal
Gene3DG3DSA:3.90.70.101.2E-15501699No hitNo description
SuperFamilySSF540013.02E-15501704No hitNo description
SuperFamilySSF1014471.11E-6807878No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MVVSQKLKEA EDTGQYSLLL VFFPSLRFAA GEPSDLVSTF HHSHVVEAEF TEQDSLLMTR  60
NFLATAMFNE GLFYLNDEYM KLMPMDAAES HLLIEKGVYN GLLRKYFIFR ICETLGEEYT  120
FSSRDRHGGT FKSTAYITLN QLRRSSKLGE LMTTLDKMLD EPQDYKPPFF WGCLETEAQY  180
PLMVEVGNVN RKRLVLTLKI SHSQGNYLEL TDVFSNFPLL SLAISEDIMD QLETEVVISE  240
TGKDTYVKNR DKGKSIIEPC ENENDFMQDY GKRTRLVTKI ARCKFFAEGF CPFGDECWFS  300
HHVGSDGNSC CIFSCEASGS DSKGKSVLEL CENENYLDPL KLKKGSEAVG DADSSRFVTL  360
SGFVLGRCCW DTSVSKVFRK PELSLAGVRP GKKTPLETAK ESVRVYPDHV LTPPNLRNIF  420
GQKLYDMCYG KGVPPLPDIS CWFERFKNKN DKAIYENQLL RWRSPKRSPN WGEGVTRVNR  480
EWVELSEGDK KKVGPIRSEE EHKVVGDVRD QGNHQLCAAY VCVNLVSSLR VIEGDDKDFV  540
NLSVKELCFS ACGPVQEGHK CRAMLLTSAL EFIKDHGVTE QRGTEGDSFS CVTDKPPRKS  600
KAKKIRIADF GYLGNDTHRA LKRLETQPIG ATLVIFSDYW GIQKGEIYRG PKSDRSRYEA  660
LHGVTIVDAF LIDGELVYWC KSSHGEEYHD KGYVLVSGET MVLGHHFSAG RGESRFGVNR  720
GLNQRKERDK TSGVFGIFGY VMLRGFVKVL TLFSYILGNI VDVKGEMINF AASSDSNSIP  780
MKGSTTEEAS SVTVFCIYHI LYYIFSTYQE TVTKFLETAV KETKKIETED GSTLFAVKEI  840
TETFHGDSAK EEAQLLRVFV IVRDFMSILD KVCNEMEAE
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00105.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487439.10.0PREDICTED: uncharacterized protein LOC108857929
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2170323