PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00102.1_g00022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HRT-like | ||||||||
Protein Properties | Length: 390aa MW: 43340.4 Da PI: 9.7582 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 46.4 | 6.6e-15 | 193 | 223 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+ edG++C++ Pv gRK C eHKG+Ri Rsa1.0_00102.1_g00022.1 193 VCGVLKEDGTTCSTAPVTGRKGCTEHKGQRI 223 7*****************************7 PP | |||||||
2 | HRT-like | 43.2 | 6.5e-14 | 243 | 273 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGvil + C+ +Pv RKRCe HKGmR+ Rsa1.0_00102.1_g00022.1 243 ICGVILPEMIRCRSKPVSRRKRCEDHKGMRV 273 8*****************************7 PP | |||||||
3 | HRT-like | 24.3 | 5.2e-08 | 315 | 341 | 2 | 28 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKG 28 C ++++ G +C+r++ g RC++HK Rsa1.0_00102.1_g00022.1 315 CEATTKSGLPCTRSAPNGSRRCWQHKE 341 99************************7 PP | |||||||
4 | HRT-like | 63.2 | 3.6e-20 | 358 | 388 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+l dGsvC+++PvkgRKRC eHKGmRi Rsa1.0_00102.1_g00022.1 358 VCGVKLYDGSVCEKPPVKGRKRCLEHKGMRI 388 7*****************************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MYKRDDYLRN NPDGVFSKWQ GFARSMRLLP KPISETAELR RSTVADYSLI SRDLAPKILI 60 GAKSREDLRV GKDFVGSSRY RVKESIQGLG VAVSIHDLKA SSLGPTESIR TRLRSYGKSV 120 PHQDSPKKLG SILKDKKHGL AEEREISCVG AEENNTNNKV HAASILRLSR SRPQPVLERH 180 DDDVVDGSDF ASVCGVLKED GTTCSTAPVT GRKGCTEHKG QRISCLPPPP AKKLPCEEET 240 EEICGVILPE MIRCRSKPVS RRKRCEDHKG MRVNAFFFLL NPTERDKILK EDNKSKPETR 300 TSSTNQEEPG QGLLCEATTK SGLPCTRSAP NGSRRCWQHK ENKSSENVQT SATVTQVVCG 360 VKLYDGSVCE KPPVKGRKRC LEHKGMRITS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that negatively modulates gibberellin-mediated developmental processes. May act as transcriptional repressor of giberellin controlled genes. Binds DNA without sequence preference. {ECO:0000269|PubMed:16244914}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00102.1_g00022.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY533506 | 0.0 | AY533506.1 Brassica napus effector of transcription mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018448962.1 | 0.0 | PREDICTED: protein EFFECTOR OF TRANSCRIPTION-like isoform X1 | ||||
Refseq | XP_018449191.1 | 0.0 | PREDICTED: protein EFFECTOR OF TRANSCRIPTION-like isoform X1 | ||||
Swissprot | A2RQG7 | 0.0 | ET_BRANA; Protein EFFECTOR OF TRANSCRIPTION | ||||
TrEMBL | A0A3N6QBK7 | 0.0 | A0A3N6QBK7_BRACR; Uncharacterized protein | ||||
STRING | Bra026458.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2954 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26170.1 | 1e-112 |