PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00096.1_g00017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 260aa MW: 29446.3 Da PI: 10.2759 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.5 | 1e-20 | 132 | 181 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 g++GVr ++ +grW AeIrd r r++lg+f+taeeAa+a++aa+ +l+g Rsa1.0_00096.1_g00017.1 132 GFRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAAMRLRG 181 79*******.**********32....25*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.99E-21 | 132 | 189 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.405 | 132 | 189 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-14 | 132 | 181 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.4E-31 | 132 | 195 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.20E-17 | 133 | 188 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.2E-28 | 133 | 189 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-10 | 133 | 144 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-10 | 155 | 171 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MENTVDAKRL QLSFPLRSGV ETHQSLETYG LYKDTPLVCM PFSGSKPPFS NLTVTEPFNG 60 PDTFDISSLF SPDPKPVPAS QRRVMDDSIA AIVGENVLFG SNNIKVSEQH FTATETEDGV 120 KRWRKMPEKN GGFRGVRKRP WGRWSAEIRD RIGRCRHWLG TFDTAEEAAR AYDAAAMRLR 180 GTKAKTNFVV HPVFPVEIAE TQSSTTEEDR RRRKKKRMNV RKCVKVTSVE QLFSDTTRNL 240 TSSSNDGNVI CPFNNLKKWA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-17 | 124 | 188 | 6 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 210 | 216 | RRRKKKR |
2 | 211 | 216 | RRKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00096.1_g00017.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC018848 | 5e-72 | AC018848.6 Arabidopsis thaliana chromosome 1 BAC F5I6 genomic sequence, complete sequence. | |||
GenBank | AC018849 | 5e-72 | AC018849.2 Arabidopsis thaliana chromosome 1 BAC T21F11 genomic sequence, complete sequence. | |||
GenBank | AY560844 | 5e-72 | AY560844.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g80580) mRNA, complete cds. | |||
GenBank | BT026038 | 5e-72 | BT026038.1 Arabidopsis thaliana At1g80580 mRNA, complete cds. | |||
GenBank | CP002684 | 5e-72 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | DQ446446 | 5e-72 | DQ446446.1 Arabidopsis thaliana clone pENTR221-At1g80580 ethylene-responsive element-binding family protein (At1g80580) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018469814.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF084 | ||||
Swissprot | Q9M8M5 | 2e-78 | ERF84_ARATH; Ethylene-responsive transcription factor ERF084 | ||||
TrEMBL | A0A078HPH5 | 1e-156 | A0A078HPH5_BRANA; BnaC02g22960D protein | ||||
STRING | Bra008460.1-P | 1e-148 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80580.1 | 4e-78 | ERF family protein |