PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_00095.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 316aa MW: 35702.9 Da PI: 4.2704 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 22.4 | 1.6e-07 | 14 | 51 | 2 | 39 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 ri + +tf+kR g+ K L+ L+da++av+ Rsa1.0_00095.1_g00006.1 14 RITKRESAATTFTKRTYGLHSKIAQLCLLTDAQIAVLA 51 788888999***************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.2E-4 | 5 | 68 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.919 | 5 | 50 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 9.65E-15 | 6 | 84 | No hit | No description |
SuperFamily | SSF55455 | 8.89E-11 | 6 | 78 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-7 | 14 | 55 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 316 aa Download sequence Send to blast |
MVKKGTKRKP TIERITKRES AATTFTKRTY GLHSKIAQLC LLTDAQIAVL ATPPSANSNV 60 SFFSFGHSSV DSIVKAFLTG ERPVREERDD DKEDLGICFA RKELGLPQWW EDDALLKSKN 120 LQELNRAVNS MSRLLTKIKE LRADDAADEQ EQPPPLKKKM KKTEPTVEQT LVLHKTLDCN 180 NNVMTEEEEL DHIMSTCESF CLPRNNNKMT EPTVDQPLIF PSDICVPDSN DFSTGEMSLA 240 YEIEDINQLI DFDLDTTSVF LDDWLLESGD GFVETTTTTT TTQESNSYYV ACDYDASALN 300 EDDTDFSDYL TQFLQS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_00095.1_g00006.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018482131.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL16 | ||||
TrEMBL | A0A0D3BYQ5 | 1e-132 | A0A0D3BYQ5_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g127100.1 | 1e-133 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20280 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G49420.1 | 6e-61 | M-type_MADS family protein |