PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00094.1_g00020.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 965aa MW: 106649 Da PI: 6.516

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00094.1_g00020.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.8	1.1e-28	641	691	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Rsa1.0_00094.1_g00020.1 641 EKTIGLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 691 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.041	630	711	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-24	644	691	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.05E-23	853	949	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.3E-22	861	946	No hit	No description
SMART	SM00666	6.9E-27	862	947	IPR000270	PB1 domain
PROSITE profile	PS51745	28.375	862	947	IPR000270	PB1 domain
Pfam	PF00564	6.1E-18	864	946	IPR000270	PB1 domain
CDD	cd06407	7.03E-41	864	946	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 965 aa Download sequence Send to blast
MEGSGGGGDG GFLPNPSFGA FPETAMDMDF MEELFFDGCW LETTDGKSLR HTAGQPAPNS 60 INLNNNNNNN NSFPYGYQFS ETPSQDHISN ADTGRKFPPI TPGFLKTEAL TNQPMTQVPF 120 DQSAAMSSAQ AEKFLLEETE RGRRYWIAPR TRQGPSSSVK DRLVQAINGL EVQEKDFLIQ 180 IWVPIQQEGK NFLTTSEQPH FFNPKYSSLK RYRDVSVSYN FLADEDSKES VGLPGRVFLG 240 KLPEWTPDVR FFRSEEYPRI KEAQRCDVRG SLALPVFESG SGTCLGVVEI VTTTQKMNYR 300 PELENICKAL EAVNLRSSAN LQSPSSEFLQ AYKHFYSAVI PEVSVFLTSV CRSYDLPLAL 360 TWAPCARQGR GGSRHSDENF SECVSTLDSA CFVLDQQSHN FQEACSEHHL LQGEGIVGKA 420 FKATKLFFVP EVTTFSKTNY PLAHHAKISG LHAALAVPLK NKFNGSVEFV LEFFFPKSCL 480 DTEAQQETLK SLSVTLQQDF RSLHLVIDKE MELEVVFPVR EELLFSENTL RVDAETGESM 540 KPLPLEEISQ EDSSWISHMI NANEKGKGVS LSWEYQKEEP KEEFMLTSGW DNNNNNHSSF 600 LSDADQFQKA SNSGFDSASF GVGQSLLGSR RPGEKRRTKT EKTIGLEVLR QYFAGSLKDA 660 AKSIGVCPTT LKRICRQHGI TRWPSRKIKK VGHSLKKLQL VIDSVQGVQG SIQLDSFYTS 720 FPELSSPNNV SGSGTGTGTS FKNPLTENGV SVQGNAVAPT SPPPSSSCSH SSGSSTCCST 780 GANQSTNTAN TSNTISTLMA ENAGAILKRA RSEVRLRTAN QEEDTKFLSR TLSHRAFSEH 840 PPLFKNLPRS RSSLKGAGGG GASKVKASFG EAKVRFTLLP TWGFRELQQE IARRFNIDNN 900 IIATFDLKYL DDDKEWVLLT CEADLEECID IYRSSQSRTI KISVHEASQG KLGGSFGSTG 960 PVPLL

Sequence ? help Back to Top

Protein Sequence Length: 965 aa Download sequence Send to blast

MEGSGGGGDG GFLPNPSFGA FPETAMDMDF MEELFFDGCW LETTDGKSLR HTAGQPAPNS  60
INLNNNNNNN NSFPYGYQFS ETPSQDHISN ADTGRKFPPI TPGFLKTEAL TNQPMTQVPF  120
DQSAAMSSAQ AEKFLLEETE RGRRYWIAPR TRQGPSSSVK DRLVQAINGL EVQEKDFLIQ  180
IWVPIQQEGK NFLTTSEQPH FFNPKYSSLK RYRDVSVSYN FLADEDSKES VGLPGRVFLG  240
KLPEWTPDVR FFRSEEYPRI KEAQRCDVRG SLALPVFESG SGTCLGVVEI VTTTQKMNYR  300
PELENICKAL EAVNLRSSAN LQSPSSEFLQ AYKHFYSAVI PEVSVFLTSV CRSYDLPLAL  360
TWAPCARQGR GGSRHSDENF SECVSTLDSA CFVLDQQSHN FQEACSEHHL LQGEGIVGKA  420
FKATKLFFVP EVTTFSKTNY PLAHHAKISG LHAALAVPLK NKFNGSVEFV LEFFFPKSCL  480
DTEAQQETLK SLSVTLQQDF RSLHLVIDKE MELEVVFPVR EELLFSENTL RVDAETGESM  540
KPLPLEEISQ EDSSWISHMI NANEKGKGVS LSWEYQKEEP KEEFMLTSGW DNNNNNHSSF  600
LSDADQFQKA SNSGFDSASF GVGQSLLGSR RPGEKRRTKT EKTIGLEVLR QYFAGSLKDA  660
AKSIGVCPTT LKRICRQHGI TRWPSRKIKK VGHSLKKLQL VIDSVQGVQG SIQLDSFYTS  720
FPELSSPNNV SGSGTGTGTS FKNPLTENGV SVQGNAVAPT SPPPSSSCSH SSGSSTCCST  780
GANQSTNTAN TSNTISTLMA ENAGAILKRA RSEVRLRTAN QEEDTKFLSR TLSHRAFSEH  840
PPLFKNLPRS RSSLKGAGGG GASKVKASFG EAKVRFTLLP TWGFRELQQE IARRFNIDNN  900
IIATFDLKYL DDDKEWVLLT CEADLEECID IYRSSQSRTI KISVHEASQG KLGGSFGSTG  960
PVPLL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00094.1_g00020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189656	0.0	AC189656.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS015K01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018471933.1	0.0	PREDICTED: protein NLP2
Refseq	XP_018471934.1	0.0	PREDICTED: protein NLP2
Refseq	XP_018471935.1	0.0	PREDICTED: protein NLP2
Refseq	XP_018471936.1	0.0	PREDICTED: protein NLP2
Refseq	XP_018471937.1	0.0	PREDICTED: protein NLP2
Refseq	XP_018471938.1	0.0	PREDICTED: protein NLP2
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	M4D543	0.0	M4D543_BRARP; Uncharacterized protein
STRING	Bra011600.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein